PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510662.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 679aa    MW: 76102.9 Da    PI: 6.8171
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l  +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF   + +
  XP_004510662.1 130 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGYEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGE 220
                     99****************************9543..445569************************************************..448 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                      ++l+v+v+r
  XP_004510662.1 221 HGQLRVGVRR 230
                     9999****98 PP
2Auxin_resp100.32.6e-33256336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+ t+++F v+Y+Pr+  s+F+v ++k+++a++ +k+svGmRfkm+fe+eds+err+sGt+vgv d++   W+nS+WrsLk
  XP_004510662.1 256 ASHAVMTRTMFVVYYKPRT--SQFIVGLNKYLEAVNhNKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSA-GWSNSQWRSLK 336
                     689***************6..9*************9889******************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-41119245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-41121259IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-19128230No hitNo description
PfamPF023622.7E-21130230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801130232IPR003340B3 DNA binding domain
SMARTSM010195.4E-21130232IPR003340B3 DNA binding domain
PfamPF065072.1E-31256336IPR010525Auxin response factor
SuperFamilySSF542776.38E-13552636No hitNo description
PfamPF023095.4E-5557596IPR033389AUX/IAA domain
PROSITE profilePS5174525.356560641IPR000270PB1 domain
PfamPF023091.0E-5602643IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAHLETNLSA SRISQQEKGV KNDDMYEELW KLSAGPLVDV PNTGDKVFYF PQGHMEQLQA  60
STDQELNQEI PHFNLPSKIL CRVVNIQLLA EQETDEVYAC VALLPESDQT VPANPDPDRS  120
EAPKQKFHSF CKILTASDTS THGGFSVLRK HATECLPPLD MTQATPTQEL AAKDLHGYEW  180
KFKHIYRGQP RRHLLTTGWS TFVASKRLVA GDAFVFLRGE HGQLRVGVRR MAKQQSSMPS  240
SVISSQSMHL GVLATASHAV MTRTMFVVYY KPRTSQFIVG LNKYLEAVNH NKFSVGMRFK  300
MRFEGEDSPE RRFSGTIVGV GDVSAGWSNS QWRSLKVQWD EPATIPRPDR VSSWEIEPFM  360
SSPALNVTQT AMKSKRSRPA SDVSSCGFWY PGSSPAHELT QEVQNKENQI VCSRVMVEGI  420
WPNSPNLNVT SNPFSDAKNK GYPNINIAPR LSDGPACDRL EDAKKTENPL DCWLFGVNLN  480
NNNKCSNVNS CLDKEVGCGS LSNVTSSGPK ESNPANACET EKIIQSPNYS LSNKKGQKQI  540
ISDASPNEWQ NQLANVPSMR TRTKVQMQGV AVGRALDLSM LNGYDDLIDE VEKLFDIKGE  600
LRSQNKWRVT FTDNENDTML VGDDPWPEFC NMVKKIFICS KEELKKMKCK LPNSSLEIEE  660
TLLSLDSHNR DETQQTHVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1661936113357Auxin response factor 1
4ldw_A1e-1661936113357Auxin response factor 1
4ldw_B1e-1661936113357Auxin response factor 1
4ldx_A1e-1661936113357Auxin response factor 1
4ldx_B1e-1661936113357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510662.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510662.10.0auxin response factor 18 isoform X4
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A1S2YVQ20.0A0A1S2YVQ2_CICAR; Auxin response factor
STRINGXP_004510661.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]