PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510661.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ARF | ||||||||
Protein Properties | Length: 688aa MW: 77192.3 Da PI: 6.8149 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.4e-23 | 130 | 230 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF + + XP_004510661.1 130 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGYEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL--RGE 220 99****************************9543..445569************************************************..448 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++l+v+v+r XP_004510661.1 221 HGQLRVGVRR 230 9999****98 PP | |||||||
2 | Auxin_resp | 87.2 | 3.2e-29 | 256 | 345 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.........sGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F v+Y+Pr+ s+F+v ++k+++a++ +k+svGmRfkm+fe+eds+err+ sGt+vgv d++ W+nS+WrsLk XP_004510661.1 256 ASHAVMTRTMFVVYYKPRT--SQFIVGLNKYLEAVNhNKFSVGMRFKMRFEGEDSPERRYlllcdlvrfSGTIVGVGDVSA-GWSNSQWRSLK 345 689***************6..9*************9889*******************976666666668********777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-41 | 119 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-41 | 121 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.41E-19 | 128 | 230 | No hit | No description |
PROSITE profile | PS50863 | 11.801 | 130 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-21 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-21 | 130 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-27 | 256 | 345 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 6.38E-13 | 561 | 645 | No hit | No description |
Pfam | PF02309 | 5.0E-5 | 566 | 605 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.356 | 569 | 650 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.0E-5 | 611 | 652 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MAHLETNLSA SRISQQEKGV KNDDMYEELW KLSAGPLVDV PNTGDKVFYF PQGHMEQLQA 60 STDQELNQEI PHFNLPSKIL CRVVNIQLLA EQETDEVYAC VALLPESDQT VPANPDPDRS 120 EAPKQKFHSF CKILTASDTS THGGFSVLRK HATECLPPLD MTQATPTQEL AAKDLHGYEW 180 KFKHIYRGQP RRHLLTTGWS TFVASKRLVA GDAFVFLRGE HGQLRVGVRR MAKQQSSMPS 240 SVISSQSMHL GVLATASHAV MTRTMFVVYY KPRTSQFIVG LNKYLEAVNH NKFSVGMRFK 300 MRFEGEDSPE RRYLLLCDLV RFSGTIVGVG DVSAGWSNSQ WRSLKVQWDE PATIPRPDRV 360 SSWEIEPFMS SPALNVTQTA MKSKRSRPAS DVSSCGFWYP GSSPAHELTQ EVQNKENQIV 420 CSRVMVEGIW PNSPNLNVTS NPFSDAKNKG YPNINIAPRL SDGPACDRLE DAKKTENPLD 480 CWLFGVNLNN NNKCSNVNSC LDKEVGCGSL SNVTSSGPKE SNPANACETE KIIQSPNYSL 540 SNKKGQKQII SDASPNEWQN QLANVPSMRT RTKVQMQGVA VGRALDLSML NGYDDLIDEV 600 EKLFDIKGEL RSQNKWRVTF TDNENDTMLV GDDPWPEFCN MVKKIFICSK EELKKMKCKL 660 PNSSLEIEET LLSLDSHNRD ETQQTHVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-163 | 19 | 370 | 13 | 357 | Auxin response factor 1 |
4ldw_A | 1e-163 | 19 | 370 | 13 | 357 | Auxin response factor 1 |
4ldw_B | 1e-163 | 19 | 370 | 13 | 357 | Auxin response factor 1 |
4ldx_A | 1e-163 | 19 | 370 | 13 | 357 | Auxin response factor 1 |
4ldx_B | 1e-163 | 19 | 370 | 13 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510661.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510661.1 | 0.0 | auxin response factor 18 isoform X2 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A1S2YVP4 | 0.0 | A0A1S2YVP4_CICAR; Auxin response factor | ||||
STRING | XP_004510661.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Publications ? help Back to Top | |||
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