PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510651.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 291aa    MW: 33315.4 Da    PI: 7.4408
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll ++v+ +G g+Wk+ +++ g+ R++k+c++rw +yl
   XP_004510651.1 14 KGPWTPKEDTLLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding53.26.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w++yl
   XP_004510651.1  67 RGNISPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112
                      7899******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7961IPR017930Myb domain
SuperFamilySSF466892.68E-3011108IPR009057Homeodomain-like
SMARTSM007174.3E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-241568IPR009057Homeodomain-like
CDDcd001676.14E-101661No hitNo description
PROSITE profilePS5129425.48462116IPR017930Myb domain
SMARTSM007172.1E-1466114IPR001005SANT/Myb domain
PfamPF002491.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2669116IPR009057Homeodomain-like
CDDcd001671.11E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRAPCCAKV GLHKGPWTPK EDTLLTKYVQ AHGEGQWKSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI SPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT YLCKKMQNDQ  120
QKCDEIDLEQ KQHQVKNNNK KKKSNKQKKS EKNKGTKNGN NIQEEEKIQV YLPKPIRIKA  180
LTLPRTDSGT STLESNSSIA SQEKEGTKQV VINNNNNNNN VIHEVGEMGE NDGFGFSSDD  240
HDLVNEIESG SFFDTCNDHG MLEKLYDEYL QLLNLDDCNF EFDSFAESFF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510651.10.0transcription factor MYB8-like
TrEMBLA0A1S2YVP20.0A0A1S2YVP2_CICAR; transcription factor MYB8-like
STRINGXP_004510651.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-63myb domain protein 111