PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 33315.4 Da PI: 7.4408 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v+ +G g+Wk+ +++ g+ R++k+c++rw +yl XP_004510651.1 14 KGPWTPKEDTLLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.7e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w++yl XP_004510651.1 67 RGNISPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112 7899******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.7 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.68E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.14E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.484 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRAPCCAKV GLHKGPWTPK EDTLLTKYVQ AHGEGQWKSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI SPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT YLCKKMQNDQ 120 QKCDEIDLEQ KQHQVKNNNK KKKSNKQKKS EKNKGTKNGN NIQEEEKIQV YLPKPIRIKA 180 LTLPRTDSGT STLESNSSIA SQEKEGTKQV VINNNNNNNN VIHEVGEMGE NDGFGFSSDD 240 HDLVNEIESG SFFDTCNDHG MLEKLYDEYL QLLNLDDCNF EFDSFAESFF D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510651.1 | 0.0 | transcription factor MYB8-like | ||||
TrEMBL | A0A1S2YVP2 | 0.0 | A0A1S2YVP2_CICAR; transcription factor MYB8-like | ||||
STRING | XP_004510651.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 5e-63 | myb domain protein 111 |