PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510648.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Dof
Protein Properties Length: 271aa    MW: 30156.2 Da    PI: 8.5738
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-392079261
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk 
  XP_004510648.1 20 PQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKI 79
                    6899*****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-271578IPR003851Zinc finger, Dof-type
PfamPF027011.7E-332278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9662478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEGIAPNSCT RQVLEKKARP QEQINCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE  60
GGSLRNVPVG GGSRKNKKIT PNPSKIPDLN PPTLQVSSQN PKMQGGQDLN LSFPSMENYH  120
HHHHHHGMSS FVHHEMHNNN ESSSSAPNSL SALDLLRSSM ASRGLNPYAN NNNNNNNNNN  180
NNNSLMPNSN ALYPNGFPMQ EVKPSLGFSI DGIGNRSYDH VQEGGGNGRL LFPFGDVNNK  240
QLSTSDVEVE HNKEQGNSAG YWSGMIGEGS W
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-69AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510648.10.0dof zinc finger protein DOF2.5-like
RefseqXP_004510649.10.0dof zinc finger protein DOF2.5-like
RefseqXP_012574131.10.0dof zinc finger protein DOF2.5-like
SwissprotQ433851e-59DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A1S2YVM50.0A0A1S2YVM5_CICAR; dof zinc finger protein DOF2.5-like
STRINGXP_004510648.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.44e-56Dof family protein