PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510646.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 612aa    MW: 69459 Da    PI: 7.7442
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.2e-19131232199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g ++ p+ +ae+         +++ +  ++  +d + ++W++k+iyr++++r++lt+GW++Fv  ++L +gD++vF   + +
  XP_004510646.1 131 FAKILTQSDANNGGGFSCPRYCAEKLfpcldysTSPPVQ--DIFPKDIHDQKWQFKHIYRGTPKRHLLTTGWSQFVTHKKLVAGDSIVFL--KAE 221
                     89*********************999****986555555..7************************************************..558 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++  +++++r+
  XP_004510646.1 222 NGDIRFGIRRA 232
                     88899999986 PP
2Auxin_resp87.32.9e-29293375183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++FevvY+Pr+ t+eF vk++ v+++l++++ +GmR++ma+etedss++++  Gtv+  + +dp +Wp+S+Wr L+
  XP_004510646.1 293 AATLAANMQPFEVVYYPRSNTPEFFVKTSAVRASLHIRWFPGMRIQMAIETEDSSRISWfNGTVTFFEPIDP-KWPHSPWRALQ 375
                     68899*******************************************************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-33120235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-26125234IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-18130231No hitNo description
SMARTSM010191.6E-12131233IPR003340B3 DNA binding domain
PfamPF023621.5E-17131232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223131233IPR003340B3 DNA binding domain
PfamPF065072.4E-24293375IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MREKGKICNP SPSEMESKKK MKDMEKSVDP ELWHACAGGM VQIPQVNNKI FYFPQGHAEH  60
ARELVNFMDY PQIPHLIPCR VVATKYMADH ETDEVYVKLK LVPLHSEVSL EDDNAECSTK  120
ASETKDKPQC FAKILTQSDA NNGGGFSCPR YCAEKLFPCL DYSTSPPVQD IFPKDIHDQK  180
WQFKHIYRGT PKRHLLTTGW SQFVTHKKLV AGDSIVFLKA ENGDIRFGIR RARREICAVL  240
EPPSGYEPAT ATAIQEEDNN NSKVQRNSRG NALRISDGMM GKGKVSAQQV IQAATLAANM  300
QPFEVVYYPR SNTPEFFVKT SAVRASLHIR WFPGMRIQMA IETEDSSRIS WFNGTVTFFE  360
PIDPKWPHSP WRALQVTWDD TELLQNVKRL NPWQVKIEAN VPPIHLPTFT PPPPRKKLRL  420
LPHLTFPIDH QFSMSNFSNI FQSPISPFCQ FPEISPAGMQ GARHAHFLPN LQPFNHTTTT  480
STNVSCNTRL QKSNNDDNML CMLSISSSTE SSQKSDHVKQ QQLVLFGKKI IIEQQVPPST  540
IFEAKNENAE KSMNQAGNEN AEKLTDDFSN LHLPCLSERP FLERLELNES KETKDGEHKM  600
NLSEPSPKWL GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-711539634388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510646.10.0auxin response factor 18
TrEMBLA0A1S2YVN70.0A0A1S2YVN7_CICAR; Auxin response factor
STRINGXP_004510646.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-145auxin response factor 16