PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510559.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 393aa    MW: 43648.8 Da    PI: 4.6877
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19122171255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  XP_004510559.1 122 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 171
                     69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-22122180IPR016177DNA-binding domain
CDDcd000183.57E-32122180No hitNo description
PROSITE profilePS5103224.092122179IPR001471AP2/ERF domain
SMARTSM003806.2E-37122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32122181IPR001471AP2/ERF domain
PRINTSPR003671.2E-11123134IPR001471AP2/ERF domain
PfamPF008479.0E-12123171IPR001471AP2/ERF domain
PRINTSPR003671.2E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MCGGAIISDF IPAAAAVGGS RRVTADILWP NLRKQGSRKP FLLDDDFEAG FREFKDDSDF  60
DEDEEDDDDD EGLLVGGKGF TFSSNNTKSF KTFSRGSTAA KSVSPKSNEQ AEKECKRKRK  120
NQYRGIRQRP WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDAEARRIR GKKAKVNFPE  180
EAPVTSSKRF KPNVENKLVN KNLNSFKPNG NRMFNFGENV ENYYSPMDQV EQKPLVNNNN  240
QYANMGPFSG NGVQHSQISP SADVTAYFSS EHSSNSFDYS DLGWGEQGPK TPEISSMLSA  300
AAPLESESQY VQNNMQSNNN QNMLPVQDNS AKTLSEELAD IESQLKFFET PYDDNWGDAS  360
LASFLGGDAT QDGGNPMNLW SFDDLPSISG GVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21122179260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-211221811474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5150260.0AJ515026.1 Cicer arietinum partial mRNA for transcription factor EREBP-like protein (erebp gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001351671.10.0transcription factor EREBP-like protein
RefseqXP_027192102.10.0transcription factor EREBP-like protein isoform X1
TrEMBLA0A3Q7K6X90.0A0A3Q7K6X9_CICAR; transcription factor EREBP-like protein
STRINGXP_004510558.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.25e-65related to AP2 12