PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510544.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 356aa    MW: 39571.4 Da    PI: 9.6556
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix483.3e-1566155186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  +  Liea  e+  +l+rg+lk+++W+ev++ +       ++ ++ +qCk++++ ++k+yk +k+    +   ++s++p++d+l+
  XP_004510544.1  66 CWSEGATAILIEAWGERYLELSRGNLKQKHWKEVAEIVngreDYVKVPKTDIQCKNRIDTVKKKYKSEKAKIAAGGIITTSKWPFYDKLD 155
                     7*************************************9855556677899********************9999888899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-2564157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDDDEIQSHS SPASGSPASS PGAIGRISVT VAAPAPMEQP AANSYALALP IQNQTRGNNG  60
GGREDCWSEG ATAILIEAWG ERYLELSRGN LKQKHWKEVA EIVNGREDYV KVPKTDIQCK  120
NRIDTVKKKY KSEKAKIAAG GIITTSKWPF YDKLDHLIGP AAKISGVSAT GKSNLPQQKV  180
PVGFRPNQFN PEKKIQHQQV DLKYQKVHLR PRVPPVDSDS SEKEALSPIS SDSFPPEGCE  240
RKRAKVMKGR KGKGWGSSVM ELTDAIVKFG EAYEQAETSK LQQLVEMEKQ RMKFAKDLEL  300
QRMQFFMKTQ MEISQLKLGK KSCNTSKNHS NNNENSNNNH NHNNNSDNHN NNSDSE
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520575e-48AC152057.11 Medicago truncatula chromosome 8 clone mth2-25a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510544.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG86e-87ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S2YVE50.0A0A1S2YVE5_CICAR; trihelix transcription factor ASIL2
STRINGXP_004510544.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-72sequence-specific DNA binding transcription factors