PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510536.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 473aa    MW: 53789.4 Da    PI: 9.2406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510536.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08444465426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +Cr+far G C +Gd+CkF H+
  XP_004510536.1 444 QPCRHFAR-GRCYFGDNCKFLHD 465
                     69******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689064.94E-889135No hitNo description
Gene3DG3DSA:1.10.720.305.9E-989135IPR003034SAP domain
PfamPF020372.6E-10100134IPR003034SAP domain
SMARTSM005132.7E-5100134IPR003034SAP domain
PROSITE profilePS5080010.286100134IPR003034SAP domain
PROSITE profilePS5010316.324440467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-7440466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6441465IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5441466IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5443465IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MATNDSTMEF HEISSETEEG SNLSSEYDDD SEQDPDYDML EETHRSFSNL SLRNKAKKRI  60
VEDKGLATTE INSEGIEITA SSLDDENSET VQKIIKAGLL EKLKVDECKM YLKKNGLRLT  120
GNKDTLIQRI KEHLEIINGG GEKKYPPQSF VLNCKGDACT GDVVLFEQNV YEMFNIASRS  180
ASGPPCGKRI VAGRIVKESY GAAKQQHTFT IEVLWSKGEK PLPPLHPLLI KGRNLYRLKT  240
LRQKWEDEGK RQKMLMEKHS RGDVARADRE ARIQEKERRK TMKENRISKK DSAKNQSQSH  300
SCIAATRSQK QPQETTKAFI NLEKPQFPSQ HSVSSANTSI ATPAIVNKPA AVTEQRSRPI  360
DSRTVAMGSD QFRNSGQSSF NANYYSTDYH CRDKPTTFVK TNNFTERSYQ RKPLASTNQL  420
HSHVANADHV HMSIPKRESY QQKQPCRHFA RGRCYFGDNC KFLHDLGQRE CMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510536.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520573e-44AC152057.11 Medicago truncatula chromosome 8 clone mth2-25a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510536.10.0zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A1S2YVG20.0A0A1S2YVG2_CICAR; zinc finger CCCH domain-containing protein 62-like
STRINGXP_004510536.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224