PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510462.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 590aa    MW: 66014.2 Da    PI: 6.869
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15262321155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  XP_004510462.1 262 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 321
                     78*******************655454478446*************************98 PP
2AP2483e-15364415155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_004510462.1 364 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 415
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-12262321IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-17262331IPR016177DNA-binding domain
CDDcd000181.73E-21262331No hitNo description
PROSITE profilePS5103218.953263329IPR001471AP2/ERF domain
SMARTSM003804.6E-29263335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15263330IPR001471AP2/ERF domain
PRINTSPR003671.4E-6264275IPR001471AP2/ERF domain
PfamPF008476.0E-10364415IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18364425IPR016177DNA-binding domain
CDDcd000183.49E-25364425No hitNo description
PROSITE profilePS5103219.006365423IPR001471AP2/ERF domain
SMARTSM003803.6E-34365429IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18365423IPR001471AP2/ERF domain
PRINTSPR003671.4E-6405425IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEEFG RENQEHVGEG EERGTYVVPP SSHHHPHHFS VMPLRSDGSL  60
CVSDSFRHSV TPQEWRYDNA ITGGNSNEEG PKLEDFLGCY SNSSLAETKV FCSQHDQNQN  120
STNSKINVNV APSFCTNNNN TEIETRENLT NQSSLIHSFH AYNDNNNNNQ HALISNNNSM  180
YKSWMIQSQF SDGKNCNEAN GSCNFQSLNL TMSPSVQNGV VGVGAISNVQ VNEDPRKRSL  240
SKSNAREPVP RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQVYLG  300
GYDKEEKAAK AYDLAALKYW GPTTHINFPL STYEKELEEM KNMTRQEFVA NLRRKSSGFS  360
RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT  420
NFDISRYDVK RICSSSTLIA GDLAKRSPKD SAPAVITEDF NSCGSSSTPS QPPPMTITDS  480
KQHSDELSNM VWNSNSDEQH HNECGNTNIT ESSLQGSPSN KNEMNPQSPK CAVGIPNEFG  540
VSGTDYGHGY FNLHGPKFDD GNNENDHMNN NRLGNLGLVN QVPMFALWNE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1446451e-167AC144645.17 Medicago truncatula chromosome 8 clone mth2-11e15, complete sequence.
GenBankAC1833041e-167AC183304.14 Medicago truncatula chromosome 8 clone mth2-68f12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510462.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S2YV700.0A0A1S2YV70_CICAR; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_004510462.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-119AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]