PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510460.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 276aa    MW: 31505.6 Da    PI: 8.6709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510460.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.3e-171764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd+ l ++v  +G g W ++a+  g++R++k+c+ rw++yl
   XP_004510460.2 17 KGAWSREEDDTLSKYVSIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYL 64
                     79********************************************97 PP
2Myb_DNA-binding48.42.1e-1570114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
   XP_004510460.2  70 RGDISSDEEDMIIRLHRLLGNR-WSLIAKRLP-GRTDNEIKNYWNTN 114
                      667799****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.151268IPR017930Myb domain
SuperFamilySSF466892.9E-2915111IPR009057Homeodomain-like
SMARTSM007175.7E-151666IPR001005SANT/Myb domain
PfamPF002494.9E-161764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-231871IPR009057Homeodomain-like
CDDcd001674.69E-101964No hitNo description
SMARTSM007172.1E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129420.10769119IPR017930Myb domain
PfamPF002494.1E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2472120IPR009057Homeodomain-like
CDDcd001671.30E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVSNMGRRPC CPKEINKGAW SREEDDTLSK YVSIHGEGKW QKVAQNAGLK RCGKSCRQRW  60
LNYLKPGIKR GDISSDEEDM IIRLHRLLGN RWSLIAKRLP GRTDNEIKNY WNTNLSKKLK  120
KQPISSSSSW PSCSVSIQHN HHKYGNEKTK QIVHVAPQAP RPRRLIKVVE YNKILENNNS  180
IGSECDQGST EETSIADFFI DIDHHHQEEL MVGDDGESNS KIQKMEDHKV IVSTNSHSSS  240
SPSHHCHLLS EKFDPNLETL LDVELKKMAS FLGLEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261411924128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510460.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3374341e-133HQ337434.1 Medicago truncatula Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510460.20.0transcription factor WER-like
TrEMBLA0A1S2YV900.0A0A1S2YV90_CICAR; transcription factor WER-like
STRINGXP_004510460.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153551012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.13e-52myb domain protein 32