PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510395.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 333aa    MW: 38176 Da    PI: 6.7256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
   XP_004510395.1 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding48.12.7e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++ +E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
   XP_004510395.1  67 RGSFSHQEAALIIELHTILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425965IPR017930Myb domain
SuperFamilySSF466895.62E-2911108IPR009057Homeodomain-like
SMARTSM007178.3E-141363IPR001005SANT/Myb domain
PfamPF002496.1E-161461IPR001005SANT/Myb domain
CDDcd001674.57E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2465116IPR009057Homeodomain-like
SMARTSM007173.0E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.72266116IPR017930Myb domain
PfamPF002493.3E-1367110IPR001005SANT/Myb domain
CDDcd001675.25E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SHQEAALIIE LHTILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHH  120
DFVVPSFATF SDIHTPYNIG TMESNFFSFT ANPNLILNFN QDHLYLPTSS SPNPQDFHQT  180
DTKVDINNNF NANFLHQSQN PNPEIVLPSN IPNSSYEDTW SLDCVPLHHH NKNQENQISK  240
IDATPLLIVD KLINPIELMQ QYDHDHLVEL DQHIVPKLSI EDYACRILDS SNSQEHEPPA  300
KIQCYTPIQA NQLDYIDALI MSSLPSSSSQ IYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510395.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045217e-41AP004521.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT17K09, TM0049a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510395.10.0transcription factor MYB26
SwissprotQ9SPG32e-74MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A1S2YV370.0A0A1S2YV37_CICAR; transcription factor MYB26
STRINGXP_004510395.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-80myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]