PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004510384.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 482aa MW: 54014.3 Da PI: 8.9567

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510384.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_004510384.1 91 FICEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	12.8	0.00035	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_004510384.1 167 WKCEKCSKKYAVQSDWKAHSKTC 189 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.31E-7	90	113	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	90	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	91	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	91	113	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	5.7E-5	91	113	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	132	162	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.5E-4	155	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.31E-7	162	187	No hit	No description
SMART	SM00355	140	167	187	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MVKGLMFQQQ QQVVDENMSN LTSASGEASA SSGNRTEIGT SYPQQQHNLV PPQTQTQTQQ 60 VKKKRNLPGN PDPDAEVIAL SPKSLLAKNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRTSKEIRKK VYVCPEVSCV HNDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS 180 DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAMTNNT NPILPSQSQS 240 QSQQQPPSSS SHHMMINLQT QFNPQQQQDL QIFPLKKEQQ QNQSFNLSAS ELLPPWLGPN 300 NLDNHHHHQI FSPRLDQNQF SQNPNPSNIV PHHGPTFPPY HQTVPSPHMS ATALLQKAAQ 360 MGATISNRTS SSSSPSIIGT HQQHAHDSPN NVTATHFDEM FGGIMNSKKD QNLLQETHSK 420 TTTSTTHHVA ADSISCDIGG NEGLTRDFLG LRPLSHSDIL SIAGIGNCMN DQQQSHESQK 480 PW

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MVKGLMFQQQ QQVVDENMSN LTSASGEASA SSGNRTEIGT SYPQQQHNLV PPQTQTQTQQ  60
VKKKRNLPGN PDPDAEVIAL SPKSLLAKNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSKEIRKK VYVCPEVSCV HNDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS  180
DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAMTNNT NPILPSQSQS  240
QSQQQPPSSS SHHMMINLQT QFNPQQQQDL QIFPLKKEQQ QNQSFNLSAS ELLPPWLGPN  300
NLDNHHHHQI FSPRLDQNQF SQNPNPSNIV PHHGPTFPPY HQTVPSPHMS ATALLQKAAQ  360
MGATISNRTS SSSSPSIIGT HQQHAHDSPN NVTATHFDEM FGGIMNSKKD QNLLQETHSK  420
TTTSTTHHVA ADSISCDIGG NEGLTRDFLG LRPLSHSDIL SIAGIGNCMN DQQQSHESQK  480
PW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	163	229	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-35	163	229	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	129	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00355	DAP	Transfer from AT3G13810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004510384.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC140915	1e-152	AC140915.6 Medicago truncatula chromosome 8 clone mth2-10l24 map 9.500cM, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510384.1	0.0	protein indeterminate-domain 11 isoform X2
Swissprot	Q9LRW7	1e-140	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1S2YV22	0.0	A0A1S2YV22_CICAR; protein indeterminate-domain 11 isoform X2
STRING	XP_004510383.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-105	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]