PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510295.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 338aa    MW: 37047.1 Da    PI: 6.3173
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18230264135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  XP_004510295.1 230 CLHCGADKTPQWRTGPMGPKTLCNACGVRFKSGRL 264
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-7622316IPR016679Transcription factor, GATA, plant
SMARTSM004012.1E-16224274IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.281224260IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-14227288No hitNo description
Gene3DG3DSA:3.30.50.102.8E-14228262IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.21E-14229280No hitNo description
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
PfamPF003208.2E-16230264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEAPDYFVGG YYGVGGVDQF SPEKRHSGDQ KPCEPFAIDD LLDFSNADAI MSDGFFDNVA  60
GNSTDSSTVT IVDSCNSSAS GGDNRFAGTI VPYGFAGDVQ HAGELCVPYD EMAELEWLSN  120
FVEDSFSAEE ELKTLQLLSG AGAVKPQTPE SSSSTDTLPS FSTDETARNA SFLRPETPLP  180
GKARSKRSRA APGDWSTRLL HLPDAPPSET KIALVKKRED PNVECSGRKC LHCGADKTPQ  240
WRTGPMGPKT LCNACGVRFK SGRLVPEYRP AASPTFISAK HSNSHRKVLE LRRQKEMQRQ  300
QHQQILTHNS IFGVSNGGED FINYHHRHHC GPEFRHVI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510295.10.0GATA transcription factor 9-like
SwissprotO826321e-84GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A1S2YUU90.0A0A1S2YUU9_CICAR; GATA transcription factor
STRINGXP_004510295.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-72GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]