PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510270.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 298aa    MW: 35336 Da    PI: 5.8264
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.56.7e-2017758127
             NAM  58 wyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkge.......ktdWvmheyr 127
                     +yfF++r+kky++g+r+ r + ++g+Wkatgk+++v++ ++ ++g k+tLvfy+g++ k++       kt+W+m+e++
  XP_004510270.1   1 MYFFTRRSKKYENGQRPDRaVENRGFWKATGKENSVTN-NDIKIGFKRTLVFYTGKQGKSTdskqinwKTNWIMQEFT 77 
                     5******************55669*************9.999***********766655545557778*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.941195IPR003441NAC domain
SuperFamilySSF1019413.4E-24293IPR003441NAC domain
PfamPF023651.5E-9277IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MYFFTRRSKK YENGQRPDRA VENRGFWKAT GKENSVTNND IKIGFKRTLV FYTGKQGKST  60
DSKQINWKTN WIMQEFTSTT TCNTDDWVLC KIYEHQYRKK CQITIQNNQN VIVSTNIDDT  120
SPNQSNQHFQ VQQMQASLSY DMDFTPQYQL SQHFQTQQMQ ASLLCNMDFT PQCQLNQHFQ  180
AQEMQISLSS NIDFMPQYQH NQHFQTQQIQ ASLPTEIDFT PKYQVNQHFQ VQQMQTPLSS  240
NMNFTSQYQL NQYFQAQQMQ DSLSTDMASM PQYQPNQHSQ AQTDEEYDDP FELIDFDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-2129674166NO APICAL MERISTEM PROTEIN
1ut4_B5e-2129674166NO APICAL MERISTEM PROTEIN
1ut7_A5e-2129674166NO APICAL MERISTEM PROTEIN
1ut7_B5e-2129674166NO APICAL MERISTEM PROTEIN
3swm_A5e-2129677169NAC domain-containing protein 19
3swm_B5e-2129677169NAC domain-containing protein 19
3swm_C5e-2129677169NAC domain-containing protein 19
3swm_D5e-2129677169NAC domain-containing protein 19
3swp_A5e-2129677169NAC domain-containing protein 19
3swp_B5e-2129677169NAC domain-containing protein 19
3swp_C5e-2129677169NAC domain-containing protein 19
3swp_D5e-2129677169NAC domain-containing protein 19
4dul_A5e-2129674166NAC domain-containing protein 19
4dul_B5e-2129674166NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510270.10.0NAC domain-containing protein 2
TrEMBLA0A1S2YUU50.0A0A1S2YUU5_CICAR; NAC domain-containing protein 2
STRINGXP_004510270.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3074122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.26e-23NAC family protein