PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 405aa MW: 44170.2 Da PI: 7.0412 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.1 | 6.4e-38 | 41 | 180 | 2 | 110 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssg. 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++ +++++ s ++++++ + XP_004510040.1 41 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAQLpawnptaTTPPS-------STPQQHHQHTDe 128 79**************************************************************666655433333.......333333222222 PP TCP 89 .............................kaaksaa.kskksqksaasalnl 110 ++ +s++ + +++++++++++ + XP_004510040.1 129 mfhrqspvhddpvtgstsrraaalerripQQFSSQQlELEDNNNNNNNNSGK 180 3333335667777777666666666555422222222333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-34 | 41 | 182 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.877 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MGETTQDNNN TGGAGTATTT SKRIGGGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR 60 VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKASIDE LAQLPAWNPT ATTPPSSTPQ 120 QHHQHTDEMF HRQSPVHDDP VTGSTSRRAA ALERRIPQQF SSQQLELEDN NNNNNNNSGK 180 HKYSNASTSG FLQGSLDTDI ADTIKSFFPV DTATTSFHSY PPPPSDLLSR TPTTQQDLRL 240 SLQSFQDPIM LNHQAQNHHV LFAGASSLGF DGGGWPEQQH HEEHDHGRLH RMMAWNANAV 300 DGGNSGHGGG FVFTAPTPAF GGHAQFFTQR GPLQSSNTPS FRAWIDPSMA TATIADHHNH 360 HYLSPMIHQA SVSGGGFSIP ARIQGEEEHD GVSEKPSSAS SDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-21 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-21 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510040.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q9MAH8 | 1e-93 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A1S2YUB3 | 0.0 | A0A1S2YUB3_CICAR; transcription factor TCP4-like | ||||
STRING | XP_004510040.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-81 | TCP family protein |
Publications ? help Back to Top | |||
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