PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510032.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 187aa    MW: 20947.4 Da    PI: 9.0216
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.91.2e-4271147278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cq+e+C adl++ak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++
  XP_004510032.1  71 CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNP 147
                     **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.5E-3663132IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.60768145IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-4069149IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3171144IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEGRSIERKR TLMMEKVRRN NTVEEEVENE VEDEDCIGDA SVTEEEKKKG VGLGRRGGGS  60
GGGGGVSPPS CQAERCGADL TDAKRYHRRH KVCEFHSKAP VVVVAGLRQR FCQQCSRFHD  120
LVEFDESKRS CRRRLAGHNE RRRKTNPEAA NEGCSHSKGQ NQPKEAQCRI QMNLPAGSSG  180
YKSFNIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3759144184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00359DAPTransfer from AT3G15270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510032.11e-135squamosa promoter-binding-like protein 3
SwissprotQ387402e-41SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBLA0A1S2YU921e-134A0A1S2YU92_CICAR; squamosa promoter-binding-like protein 3
STRINGXP_004510032.11e-134(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-42squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]