PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509985.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 430aa    MW: 47982.9 Da    PI: 6.3561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-063213591154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_004509985.1 321 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 359
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.72E-7320363No hitNo description
SuperFamilySSF474591.22E-11320377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049321365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-9324367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MAEEQFQGSG NWWETPARNM RFESWQQQQQ QHHDTMSASG SSSVVFHDTL KLQPSDSSNS  60
NNDSNLHMMD LGLSSQTIDW NQASLLRGEK SSEGSFRSML QENLNSSNTN FQQENEGVRV  120
GLSHQVNWKQ EKLFSTESSN NEFKQVNRGF SLDQTQFSPQ YSSEESNMIS QGLSACSSTT  180
FQIDSSTIYG NSSMLQGLLG NETNQIQQQQ AMNFPYSTSY GLTTNELMPS WSKVTHQKQQ  240
PQNNQLHFTN NAPFWNASEG TIKDAPSSFL PPFATPIFGT PQPKNISEGR DSSSVAKKSG  300
SEPAPKRPKN ETPSPLPAFK VRKEKMGDRI TALQQLVSPF GKTDTASVLS EAIEYIKFLH  360
EQVTVLSTPY MKSGAPIQHQ QNSGKSKETE GPKQDLRSRG LCLVPVSSTF PMTHEPTVEY  420
WTPTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509985.10.0transcription factor bHLH123-like isoform X1
SwissprotQ8GXT33e-83BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A1S2YU630.0A0A1S2YU63_CICAR; transcription factor bHLH123-like isoform X1
STRINGXP_004509985.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]