PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509855.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 294aa    MW: 32785 Da    PI: 6.7393
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509855.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-111358346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ eEd  + +a + ++ +   +W++Ia+ ++ g+tl ++k ++  
   XP_004509855.1 13 EWSREEDIAFENALAIYPENdvnRWEKIAADVP-GKTLQEIKYHYEV 58
                     7********************************.**********965 PP

2Myb_DNA-binding48.81.7e-15107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
   XP_004509855.1 107 PWTEEEHKLFIEGLHKYGQGNWRGISRNYVVTRTPTQVASHAQKY 151
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.53E-11859IPR009057Homeodomain-like
PROSITE profilePS512939.604964IPR017884SANT domain
SMARTSM007173.1E-101062IPR001005SANT/Myb domain
PfamPF002491.5E-81357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-61357IPR009057Homeodomain-like
CDDcd001672.25E-101360No hitNo description
PROSITE profilePS5129420.06100156IPR017930Myb domain
SuperFamilySSF466891.44E-16102157IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-16104154IPR006447Myb domain, plants
SMARTSM007178.7E-12104154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-12105150IPR009057Homeodomain-like
PfamPF002499.0E-14107151IPR001005SANT/Myb domain
CDDcd001677.13E-12107151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDEMVCSTSC SSEWSREEDI AFENALAIYP ENDVNRWEKI AADVPGKTLQ EIKYHYEVLV  60
YDINLIESGF VILPCYKLFP ERSKNPAAGK KESKGSKYDH ERRKGIPWTE EEHKLFIEGL  120
HKYGQGNWRG ISRNYVVTRT PTQVASHAQK YYLRLKSMNE TKKRRRSSIH DITHVQNGEI  180
SAPQGPTIGQ ASDSPATSTQ TAEIYAAPVI GQPMGGPIVY AIGTPVNPIE GPPVSAIGTP  240
VNLPAPGHMS NLHPIEYSWT DDLCVWAGSG TVIPVEPRNL GPMPYPMQHP YTHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14477174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509855.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509855.10.0transcription factor SRM1-like
SwissprotQ9FNN64e-79SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S2YTX20.0A0A1S2YTX2_CICAR; transcription factor SRM1-like
STRINGXP_004509855.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-81MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]