PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32785 Da PI: 6.7393 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.3e-11 | 13 | 58 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 W+ eEd + +a + ++ + +W++Ia+ ++ g+tl ++k ++ XP_004509855.1 13 EWSREEDIAFENALAIYPENdvnRWEKIAADVP-GKTLQEIKYHYEV 58 7********************************.**********965 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.7e-15 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++++ +++G g+W+ I+r +Rt+ q+ s+ qky XP_004509855.1 107 PWTEEEHKLFIEGLHKYGQGNWRGISRNYVVTRTPTQVASHAQKY 151 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.53E-11 | 8 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.604 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-10 | 10 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-8 | 13 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-6 | 13 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-10 | 13 | 60 | No hit | No description |
PROSITE profile | PS51294 | 20.06 | 100 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-16 | 102 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-16 | 104 | 154 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.7E-12 | 104 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 105 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-14 | 107 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.13E-12 | 107 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDEMVCSTSC SSEWSREEDI AFENALAIYP ENDVNRWEKI AADVPGKTLQ EIKYHYEVLV 60 YDINLIESGF VILPCYKLFP ERSKNPAAGK KESKGSKYDH ERRKGIPWTE EEHKLFIEGL 120 HKYGQGNWRG ISRNYVVTRT PTQVASHAQK YYLRLKSMNE TKKRRRSSIH DITHVQNGEI 180 SAPQGPTIGQ ASDSPATSTQ TAEIYAAPVI GQPMGGPIVY AIGTPVNPIE GPPVSAIGTP 240 VNLPAPGHMS NLHPIEYSWT DDLCVWAGSG TVIPVEPRNL GPMPYPMQHP YTHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 4 | 77 | 1 | 74 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509855.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509855.1 | 0.0 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 4e-79 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1S2YTX2 | 0.0 | A0A1S2YTX2_CICAR; transcription factor SRM1-like | ||||
STRING | XP_004509855.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4694 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-81 | MYB family protein |
Publications ? help Back to Top | |||
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