PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509816.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 398aa MW: 45560.2 Da PI: 6.6457

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.6	3.1e-15	217	260	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+riN+++++Lr+l+P+ +K++ a+iLe A+eYIk+Lq XP_004509816.1 217 VTERNRRKRINKGLFTLRSLVPNI-----TKMDRAAILEDAIEYIKELQ 260 57*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.1E-15	10	151	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.783	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-16	212	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.22E-14	213	263	No hit	No description
SMART	SM00353	3.0E-15	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-13	217	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-16	217	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00324	333	395	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MSGMRVVEWL RPLVETKAWD YVVVWKYGND PTRFIEWMGC CCGGGNIEHV KFEEKMDDEQ 60 YNLGPICRDT LFYHPVRTKS CEALAKFPFS ISLYSSVHGE VAISQQPRWL IQQDSIGTQV 120 LIPIFGGLVE LFTANLIPKD INMMEFISAH FCVSINQEAI SEQSYTNRNF NDHYTLTPSI 180 EGLSSGSNPS TEHSKGEDKE KLVREPQKEV YHAKNLVTER NRRKRINKGL FTLRSLVPNI 240 TKMDRAAILE DAIEYIKELQ KQEIKLQEEV KALEVEDCEK NTLQLRVKTE KEQAKGTRSL 300 PLIELNQSSS DSTRKTKMKL QVEVNHIGGT EFLIKLCCEQ KKGGFSRLME AIHSFGLHVV 360 HANMITFDGI VSNNLMVEAT EQDIHPMKLR EYLIQQTG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MSGMRVVEWL RPLVETKAWD YVVVWKYGND PTRFIEWMGC CCGGGNIEHV KFEEKMDDEQ  60
YNLGPICRDT LFYHPVRTKS CEALAKFPFS ISLYSSVHGE VAISQQPRWL IQQDSIGTQV  120
LIPIFGGLVE LFTANLIPKD INMMEFISAH FCVSINQEAI SEQSYTNRNF NDHYTLTPSI  180
EGLSSGSNPS TEHSKGEDKE KLVREPQKEV YHAKNLVTER NRRKRINKGL FTLRSLVPNI  240
TKMDRAAILE DAIEYIKELQ KQEIKLQEEV KALEVEDCEK NTLQLRVKTE KEQAKGTRSL  300
PLIELNQSSS DSTRKTKMKL QVEVNHIGGT EFLIKLCCEQ KKGGFSRLME AIHSFGLHVV  360
HANMITFDGI VSNNLMVEAT EQDIHPMKLR EYLIQQTG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509816.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509816.1	0.0	transcription factor ABORTED MICROSPORES isoform X1
TrEMBL	A0A1S2YTU2	0.0	A0A1S2YTU2_CICAR; transcription factor ABORTED MICROSPORES isoform X1
STRING	XP_004509816.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12265	30	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	4e-64	bHLH family protein