PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509770.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 518aa    MW: 57003 Da    PI: 6.6316
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.8e-14220279155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  XP_004509770.1 220 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARSYDLAALKYWG 279
                     57*******************666664478446*************************98 PP
2AP250.55.2e-16322373155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_004509770.1 322 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 373
                     57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-11220279IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-17220289IPR016177DNA-binding domain
CDDcd000181.37E-21220289No hitNo description
Gene3DG3DSA:3.30.730.101.4E-15221288IPR001471AP2/ERF domain
PROSITE profilePS5103219.137221287IPR001471AP2/ERF domain
SMARTSM003805.9E-29221293IPR001471AP2/ERF domain
PRINTSPR003671.7E-6222233IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18322382IPR016177DNA-binding domain
PfamPF008472.7E-10322373IPR001471AP2/ERF domain
CDDcd000181.16E-11322381No hitNo description
Gene3DG3DSA:3.30.730.101.2E-18323381IPR001471AP2/ERF domain
SMARTSM003806.0E-31323387IPR001471AP2/ERF domain
PROSITE profilePS5103219.164323381IPR001471AP2/ERF domain
PRINTSPR003671.7E-6363383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MARSTTTNNN NWLSFSLSPM EMPQFNPYDA ASSVSSSHHH HYFLDNLYNG WGNGNSKTEV  60
QEQQQAQSIF FMDSSNGQSV NHAPPPKLED FLGDSNQTET QDSSLTHMYD HQNYFGGDHH  120
QDLNTIAGFQ AFSNNSGGSE VDDSGSIGKS SQPACNNDFG THSIESGNEF GFSTAAATAA  180
ANGALSLGVA HSSEETGSAI AAADSDSSKK IVDTFGQRTS IYRGVTRHRW TGRYEAHLWD  240
NSCRREGQAR KGRQVYLGGY DKEEKAARSY DLAALKYWGP TATTNFPVSN YAKELEEMKL  300
VTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY LGTFATEEEA  360
AEAYDIAAIK FRGANAVTNF EMNRYDVEAI MKSSLPVGGA AKRMKRSLEL EQKASVINIQ  420
QNNTQQQYAA NLNNSSSNSI NFSAIHQQHQ QIASIPYGIP YDSNAAYYHH HNLFQHFQPN  480
TNDGSAESVA TSTNAGTGLS AMPPTSAAEF FLWPNQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509770.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-161AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S2YTQ70.0A0A1S2YTQ7_CICAR; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_004509770.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-149AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]