PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 381aa MW: 40749.5 Da PI: 7.2575 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.3 | 7e-10 | 99 | 123 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ XP_004509736.1 99 FKTKLCCKFRV-GTCPYVTNCNFAHS 123 69*********.*************8 PP | |||||||
2 | zf-CCCH | 17.3 | 8.4e-06 | 177 | 202 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ XP_004509736.1 177 YKGRHCKKFYTEEGCPYGESCTFLHD 202 77888********************7 PP | |||||||
3 | zf-CCCH | 42.8 | 8.7e-14 | 261 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_004509736.1 261 WKTRICNKWEMTGYCPFGNKCHFAHG 286 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-14 | 96 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-8 | 96 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.427 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0028 | 98 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-9 | 173 | 204 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-7 | 174 | 204 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.26 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 176 | 204 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-16 | 257 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-10 | 257 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.309 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-9 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 261 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MDYSRDGNVV QIITAGGGGG DSWSSDQADW ATEDEYRYWN GNEAGETTPS SNSNCDQPRQ 60 QRSGSEPPSK KSRSNSQDNG GGSNGGGSNR AKAIGKMFFK TKLCCKFRVG TCPYVTNCNF 120 AHSVEELRRP PPNWQEIVAA HEEERSVFMN EQPREEFQIP TVGSSTFVGE SMNQRSYKGR 180 HCKKFYTEEG CPYGESCTFL HDEQSKNRES VAISLGPGGY GGGGGGSVGG GGGGSTGSGS 240 VGGGSAAAVG GNGANLKPSN WKTRICNKWE MTGYCPFGNK CHFAHGATEL HRYGGGLMEG 300 ESRDTASAVA SEAKQGVPSK THADNVVAST PPIAHSDVYH IGVPSQRPSI VSQRPGQRAH 360 QKWKGPDKIS RIYGDWIDDI E |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509736.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509736.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q9LQM3 | 1e-126 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A1S2YTM7 | 0.0 | A0A1S2YTM7_CICAR; zinc finger CCCH domain-containing protein 12 | ||||
STRING | XP_004509736.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-119 | C3H family protein |