PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509709.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 347aa MW: 38304.3 Da PI: 8.8888

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.8e-38	43	100	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds ntkfCyynnysl+qPr+fCk+CrryWt+GGalrnvP+Ggg+rk++k XP_004509709.1 43 GVIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKKQKL 100 5789**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	28	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-32	44	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	45	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	47	83	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MPSNNFKNTP STKQDHENQQ GSCSSLDSKK PPTRPSSSQN QQGVIKCPRC DSPNTKFCYY 60 NNYSLTQPRH FCKTCRRYWT NGGALRNVPI GGGCRKKQKL KTSSRFSSCN ESINKFSPSL 120 DFHLGNLPLP LLPFSPKLHL HNFQPSFYNN NQFSSNSNTT TSSTFQLDPS STSSNSLMGL 180 NLYPFSSTIG SGLFNGANEN PIQQGMNLMN VNSTSTTSNS TSLATSIESL SSMNQDLHLK 240 LQQQRLATMF GGGDNDNKKE QSSNVLTQPI LFQNLDVSKT EMFGDLRKDQ GSSGDVPMEW 300 FFGNSYSSMI TPTTTINGGN DNGNNNWSNG VNVWGDVQQQ QPYTALP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MPSNNFKNTP STKQDHENQQ GSCSSLDSKK PPTRPSSSQN QQGVIKCPRC DSPNTKFCYY  60
NNYSLTQPRH FCKTCRRYWT NGGALRNVPI GGGCRKKQKL KTSSRFSSCN ESINKFSPSL  120
DFHLGNLPLP LLPFSPKLHL HNFQPSFYNN NQFSSNSNTT TSSTFQLDPS STSSNSLMGL  180
NLYPFSSTIG SGLFNGANEN PIQQGMNLMN VNSTSTTSNS TSLATSIESL SSMNQDLHLK  240
LQQQRLATMF GGGDNDNKKE QSSNVLTQPI LFQNLDVSKT EMFGDLRKDQ GSSGDVPMEW  300
FFGNSYSSMI TPTTTINGGN DNGNNNWSNG VNVWGDVQQQ QPYTALP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509709.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174360	8e-47	AC174360.8 Medicago truncatula chromosome 8 clone mth2-31a5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509709.1	0.0	dof zinc finger protein DOF5.7
TrEMBL	A0A1S2YTL1	0.0	A0A1S2YTL1_CICAR; dof zinc finger protein DOF5.7
STRING	XP_004509709.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	6e-35	Dof family protein