PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004509331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GATA | ||||||||
Protein Properties | Length: 303aa MW: 34048.3 Da PI: 6.9258 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.5 | 1.9e-18 | 221 | 255 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l XP_004509331.1 221 CNHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 255 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 7.9E-85 | 1 | 291 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 9.4E-15 | 215 | 269 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.767 | 215 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-14 | 216 | 277 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.6E-14 | 219 | 253 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.23E-13 | 220 | 268 | No hit | No description |
Pfam | PF00320 | 3.6E-16 | 221 | 255 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 221 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MECVEAQAAL KSSFIKTTTV KLTPQTLLQE LSTFNVQNVT PVEDFFVDDF LNFSEEEEDE 60 KDENFIDKKQ QPQQQNQNES HQIFHPIIND HFASLPTTEL TVPVEEAADL EWLSYFVEDS 120 FSEFSTTENL QLQFQAKAPE PKPTFSTPCF KTPVPAKARS KRTRTGVRVW PISFVDSSST 180 SSSTTLSSSS THLDECSKPP EKKTKRMASL DGEGRNVSRR CNHCGVQKTP QWRTGPLGPK 240 TLCNACGVRF KSGRLLPEYR PACSPTFSSE LHSNHHRKVL EMRRKKEGVP GSPLPPVAPG 300 FLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004509331.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509331.1 | 0.0 | GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 4e-70 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A1S2YSS4 | 0.0 | A0A1S2YSS4_CICAR; GATA transcription factor | ||||
STRING | XP_004509331.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 4e-67 | GATA transcription factor 5 |