PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509324.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SRS
Protein Properties Length: 336aa    MW: 36613 Da    PI: 7.1242
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.12.8e-651212584154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 
                      ++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpa++rrerqqqlaa++++     +++++kr+r++        ++ ++s+ + ++
  XP_004509324.1 121 EGISCQDCGNQAKKDCPHMRCRTCCKSRGFECQTHVKSTWVPASRRRERQQQLAATTTT-----TSSNPKRPRDS--------NNLQISTRNFPS 202
                     6789*************************************************997544.....57789999985........556677777888 PP

          DUF702  99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      le +++P+ vss+a f+cvrvssvdd++e +aYqtav+igGh+fkGiLyd G+e+
  XP_004509324.1 203 GLEEANFPAVVSSPAEFKCVRVSSVDDADERYAYQTAVNIGGHLFKGILYDFGPET 258
                     9999*************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.9E-62122257IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.8E-27124166IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.8E-25209256IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGLFSLGGG GGRGNQEGES QQQQQQNQIP PAETLFWYNK NDDVSSYRGL ELWNQQQQQQ  60
QQEDVIAGGT QQARPFFSRD LYGLGVGPSR VSSDDHQTSR SAAAFMAMHH RSTSSSGGGV  120
EGISCQDCGN QAKKDCPHMR CRTCCKSRGF ECQTHVKSTW VPASRRRERQ QQLAATTTTT  180
SSNPKRPRDS NNLQISTRNF PSGLEEANFP AVVSSPAEFK CVRVSSVDDA DERYAYQTAV  240
NIGGHLFKGI LYDFGPETSS NNNNTNINDH NYNNNNYMIG ESSGVAVAQP LNLIADSNAA  300
VVASSGALVD PSSLYSTPIN AFMTTSGTQF FPRPRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509324.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1600133e-31AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
GenBankAC1837773e-31AC183777.9 Medicago truncatula clone mth2-67d13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509324.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_027192363.10.0protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD405e-72SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A1S2YSR60.0A0A1S2YSR6_CICAR; protein SHI RELATED SEQUENCE 1-like
STRINGXP_004509324.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-57Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]