PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509185.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Dof
Protein Properties Length: 225aa    MW: 23573.1 Da    PI: 8.6868
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.18.4e-382585262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg rkn k+s
  XP_004509185.1 25 EQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTQGGTLRDIPVGGGNRKNAKRS 85
                    57899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-302283IPR003851Zinc finger, Dof-type
PfamPF027018.7E-332783IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9662983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPSSDSGDSR RSTKPQNRPG APVPEQENLP CPRCDSTNTK FCYYNNYNYS QPRHFCKACR  60
RYWTQGGTLR DIPVGGGNRK NAKRSRTHHV AVTSSSSVTS APEHHFQSMA PISAAQGGSL  120
PFGGGIDGEG KQNVSGCGSF TSLLNNNVQN SGFLALGGFG LGEMGFGIGR AGWGFPGMVD  180
GSNMGVSSGI GNTWQLEGGE GGFVGAADCF SWPGLAISTP GNVLK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509185.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509185.11e-165dof zinc finger protein DOF3.4-like
SwissprotQ390881e-56DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBLA0A1S2YSG81e-164A0A1S2YSG8_CICAR; dof zinc finger protein DOF3.4-like
STRINGXP_004509185.11e-165(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.13e-53OBF binding protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]