PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509184.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 303aa MW: 32616.6 Da PI: 9.2528

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	3e-38	100	160	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg+rkn k+s XP_004509184.1 100 EQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKNAKRS 160 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	97	158	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.7E-33	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MSLFSTPTYS HSLSRPIHSF PTLSLSITSF FPINKTLFHY TLPLLHNTIP TFILLFQTKT 60 SLLTLSTSFI FRNYTMPSSD SADSRRSTKP QTRPGAPAPE QENLPCPRCD STNTKFCYYN 120 NYNYSQPRHF CKACRRYWTH GGTLRDIPVG GGTRKNAKRS RTHHVAVTSS SSTVTSAPEH 180 HFHSMAPISA AQGGSLPFGG GIDGDGKQNM SVCGSFTSLL NNNVQNSGFL ALGGFGLGLE 240 EMGFGIGRAG WGFPGMVEGS NMGVSSGIGN TWQLEGGEGG FVGAADCFSW PGLAISTQGN 300 GFK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509184.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509184.1	0.0	dof zinc finger protein DOF3.4-like
Swissprot	Q39088	5e-55	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A1S2YSF5	0.0	A0A1S2YSF5_CICAR; dof zinc finger protein DOF3.4-like
STRING	XP_004509184.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-50	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]