PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509179.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 350aa MW: 38086.9 Da PI: 8.5633

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.1e-39	59	117	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ XP_004509179.1 59 ENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKN 117 57899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	59	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	61	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MIQELFGERN YSSINGGGGG GGVLLQPLTQ SPSNSQAPSS TTTITTTVTS TTTTTTSSEN 60 QNLRCPRCDS SNTKFCYYNN YNLTQPRHFC KTCRRYWTKG GALRNVPIGG GCRKNKNIGV 120 SNTAAKTSAN KMKMVASEFI GRSVHGQGFD LEHMVPPTSQ ILWGSPQNSH LLSLLRSNQT 180 QNPNPNHVTT KEEENINLMG SSSSHSHMMT SEPLISNMLV NQRTTGGLVN SYDGVGHVLC 240 NPFWRNNQNG NFVLGEQQHQ HHHQNSEIHQ LYQKLRSSTS SSSGNNNNNN YCSEISGAPV 300 FLGNVATNSS SISNILETTF SVGGGGELGY WNPTLSWSDL QTTNGSTPYP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MIQELFGERN YSSINGGGGG GGVLLQPLTQ SPSNSQAPSS TTTITTTVTS TTTTTTSSEN  60
QNLRCPRCDS SNTKFCYYNN YNLTQPRHFC KTCRRYWTKG GALRNVPIGG GCRKNKNIGV  120
SNTAAKTSAN KMKMVASEFI GRSVHGQGFD LEHMVPPTSQ ILWGSPQNSH LLSLLRSNQT  180
QNPNPNHVTT KEEENINLMG SSSSHSHMMT SEPLISNMLV NQRTTGGLVN SYDGVGHVLC  240
NPFWRNNQNG NFVLGEQQHQ HHHQNSEIHQ LYQKLRSSTS SSSGNNNNNN YCSEISGAPV  300
FLGNVATNSS SISNILETTF SVGGGGELGY WNPTLSWSDL QTTNGSTPYP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509179.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509179.1	0.0	dof zinc finger protein DOF5.3-like
TrEMBL	A0A1S2YSF9	0.0	A0A1S2YSF9_CICAR; dof zinc finger protein DOF5.3-like
STRING	XP_004509179.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-33	DOF zinc finger protein 1