PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004509144.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HSF

Protein Properties

Length: 267aa MW: 29715.1 Da PI: 6.5241

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004509144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.1	2.2e-36	9	100	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+ ++++iswse gn+fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++Fk+g++ell XP_004509144.1 9 FLTKTYQMVDDPFTDDVISWSEIGNTFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQTELLPA 94 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+k+ XP_004509144.1 95 IKRRKT 100 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.0E-59	5	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.8E-34	5	98	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.2E-38	6	98	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.3E-21	9	32	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.2E-31	9	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-21	47	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	48	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.3E-21	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSRSAPAPFL TKTYQMVDDP FTDDVISWSE IGNTFVVWKH ADFARDLLPK YFKHNNFSSF 60 VRQLNTYGFR KIVPDKWEFA NENFKRGQTE LLPAIKRRKT VSHLTAAGKS GAIGGNSASN 120 SGGEDMGSTS TGSIEPTTQC TDLSRENEKL KKDNEKLGCE LARAKKQCDE LVGFLRDTFN 180 VGPDQINRII REGTSGSSHD TVRFDDDDIA VGECECEEGE KLKLFGVWLK SEEGKENAKI 240 TNGKSNCRKR GREDTIGGAN NELNTVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-27	4	100	25	131	Heat shock factor protein 1
5d5v_B	7e-27	4	100	25	131	Heat shock factor protein 1
5d5v_D	7e-27	4	100	25	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004509144.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004509144.1	0.0	heat shock factor protein HSF24
Swissprot	P22335	2e-91	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A1S2YSC8	0.0	A0A1S2YSC8_CICAR; heat shock factor protein HSF24
STRING	XP_004509144.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7114	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	2e-59	heat shock factor 4

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]