PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509135.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 238aa    MW: 27072.2 Da    PI: 10.4305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08144184954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_004509135.1 144 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 184
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-14136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14139194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6145184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-6158189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDVEILKSSV GSMDMISMMM QMEKFPNSQF NTEQPFYNTV PLFNQNIALS SSPPPSFNID  60
PLLIHSNLNF NTIQQQPLEQ TSLSFPYSSD NNKNSNNKKN SMATMREMIF RMAVMQPIHI  120
DPESIRPPKR RNVKISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY  180
VKFLKKQVQT LEQVGANRSN MNGGSSLMNN FNVNYSGFMM KGCQPFQMVG SASKQLLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509135.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509135.11e-175transcription factor HEC1
SwissprotQ9SND41e-49HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A1S2YSD21e-174A0A1S2YSD2_CICAR; transcription factor HEC1
STRINGXP_004509135.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]