PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LSD
Protein Properties Length: 147aa    MW: 15273.8 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.6e-133054125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  XP_004509023.1 30 CSGCRNLLVYPVGATSVCCAVCNAV 54
                    ************************9 PP

2zf-LSD146.84.9e-156993125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  XP_004509023.1 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
                    ************************9 PP

3zf-LSD141.81.7e-13107131125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  XP_004509023.1 107 CGNCRMLLMYQYGARSVKCAVCNFV 131
                     ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.5E-424128No hitNo description
TIGRFAMsTIGR010537.8E-132757IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-103054IPR005735Zinc finger, LSD1-type
SuperFamilySSF486958.23E-530128IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.9E-156695IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.1E-12104134IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVPLAPYPT PPPAPYTPPP TNGAQSQLVC SGCRNLLVYP VGATSVCCAV CNAVTAVPPP  60
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCNF VTSVGASAST TEQKFST
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004509023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0532361e-175BT053236.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-O-19 unknown mRNA.
GenBankBT0534601e-175BT053460.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-A-4 unknown mRNA.
GenBankBT1381571e-175BT138157.1 Medicago truncatula clone JCVI-FLMt-11K3 unknown mRNA.
GenBankBT1383241e-175BT138324.1 Medicago truncatula clone JCVI-FLMt-16N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509019.11e-101protein LOL1
RefseqXP_004509020.11e-101protein LOL1
RefseqXP_004509021.11e-101protein LOL1
RefseqXP_004509022.11e-101protein LOL1
RefseqXP_004509023.11e-101protein LOL1
SwissprotQ93ZB13e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A1S2YS381e-100A0A1S2YS38_CICAR; protein LOL1
STRINGXP_004509019.11e-101(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]