PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508982.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SRS

Protein Properties

Length: 358aa MW: 39783.6 Da PI: 5.606

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508982.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	22.1	4.3e-07	33	69	3	39
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 +++ +C++CGn a+ C +e C+ CC + C hv XP_004508982.1 33 QNKPKCKQCGNVARSRCPYENCKSCCSRNQNPCPIHV 69 56679*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.9E-5	37	70	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MATAPSSNST AKVGTLGLGS PVASVPPKSQ RGQNKPKCKQ CGNVARSRCP YENCKSCCSR 60 NQNPCPIHVL KANTTFPDKT PSSGAAPLDR QSFEPPPSIA GRVASLRQLS NSFAQFNNLH 120 LSLRSKKPLT RKDAAAINEW RFSKLKEYNE RNIEAENEAF DRYMQNVDLL EEVLSVKYTD 180 DNVLSASEAN PIPTENNEIM IPGLKLQLRS NSTRSDGARI RIKKIVDEGL KKLQKCAVDG 240 ESNEQIDEVN EASNKRKRTE KLSAISDLMD KINKARSEED LQSCLEVKFE LFNSDENSAT 300 VQLTDNEMDQ NQITEGDVAP AKELDYSLPK LVGTTEIDQE TLNTVDKHFS SLEYVEQL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MATAPSSNST AKVGTLGLGS PVASVPPKSQ RGQNKPKCKQ CGNVARSRCP YENCKSCCSR  60
NQNPCPIHVL KANTTFPDKT PSSGAAPLDR QSFEPPPSIA GRVASLRQLS NSFAQFNNLH  120
LSLRSKKPLT RKDAAAINEW RFSKLKEYNE RNIEAENEAF DRYMQNVDLL EEVLSVKYTD  180
DNVLSASEAN PIPTENNEIM IPGLKLQLRS NSTRSDGARI RIKKIVDEGL KKLQKCAVDG  240
ESNEQIDEVN EASNKRKRTE KLSAISDLMD KINKARSEED LQSCLEVKFE LFNSDENSAT  300
VQLTDNEMDQ NQITEGDVAP AKELDYSLPK LVGTTEIDQE TLNTVDKHFS SLEYVEQL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508982.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508982.1	0.0	uncharacterized protein LOC101504860 isoform X2
TrEMBL	A0A1S2YS06	0.0	A0A1S2YS06_CICAR; uncharacterized protein LOC101504860 isoform X2
STRING	XP_004508981.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	3e-94