PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508981.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SRS

Protein Properties

Length: 359aa MW: 39870.6 Da PI: 5.606

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508981.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	23.2	2e-07	33	69	3	39
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 +++ +C++CGn a+ C +e C+ CC + C hv XP_004508981.1 33 QNKPKCKQCGNVARSRCPYENCKSCCSRNQNPCPIHV 69 56679*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.5E-5	37	70	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MATAPSSNST AKVGTLGLGS PVASVPPKSQ RGQNKPKCKQ CGNVARSRCP YENCKSCCSR 60 NQNPCPIHVL KANTTFPDKT PSSGAAPLDR QSFEPPPSIS AGRVASLRQL SNSFAQFNNL 120 HLSLRSKKPL TRKDAAAINE WRFSKLKEYN ERNIEAENEA FDRYMQNVDL LEEVLSVKYT 180 DDNVLSASEA NPIPTENNEI MIPGLKLQLR SNSTRSDGAR IRIKKIVDEG LKKLQKCAVD 240 GESNEQIDEV NEASNKRKRT EKLSAISDLM DKINKARSEE DLQSCLEVKF ELFNSDENSA 300 TVQLTDNEMD QNQITEGDVA PAKELDYSLP KLVGTTEIDQ ETLNTVDKHF SSLEYVEQL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MATAPSSNST AKVGTLGLGS PVASVPPKSQ RGQNKPKCKQ CGNVARSRCP YENCKSCCSR  60
NQNPCPIHVL KANTTFPDKT PSSGAAPLDR QSFEPPPSIS AGRVASLRQL SNSFAQFNNL  120
HLSLRSKKPL TRKDAAAINE WRFSKLKEYN ERNIEAENEA FDRYMQNVDL LEEVLSVKYT  180
DDNVLSASEA NPIPTENNEI MIPGLKLQLR SNSTRSDGAR IRIKKIVDEG LKKLQKCAVD  240
GESNEQIDEV NEASNKRKRT EKLSAISDLM DKINKARSEE DLQSCLEVKF ELFNSDENSA  300
TVQLTDNEMD QNQITEGDVA PAKELDYSLP KLVGTTEIDQ ETLNTVDKHF SSLEYVEQL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508981.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508981.1	0.0	uncharacterized protein LOC101504860 isoform X1
TrEMBL	A0A1S2YRZ1	0.0	A0A1S2YRZ1_CICAR; uncharacterized protein LOC101504860 isoform X1
STRING	XP_004508981.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	3e-93