PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508897.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 469aa    MW: 53983.4 Da    PI: 7.3791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508897.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.6e-19209255148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed ll+++v+q+G++ W+ Ia++++ gR +kqc++rw+++l
   XP_004508897.2 209 KGQWTVDEDRLLIQLVEQYGMRKWSHIAQKLP-GRIGKQCRERWHNHL 255
                      799*****************************.*************97 PP
2Myb_DNA-binding57.82.5e-18263303345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
   XP_004508897.2 263 IWTDEEDKILIQAHTEIGNK-WAEIAKRLP-GRTENSIKNHWN 303
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129431.452204259IPR017930Myb domain
SuperFamilySSF466892.22E-31206302IPR009057Homeodomain-like
SMARTSM007175.3E-18208257IPR001005SANT/Myb domain
PfamPF002499.3E-18209255IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-29210263IPR009057Homeodomain-like
CDDcd001671.36E-16212255No hitNo description
PROSITE profilePS5129420.667260310IPR017930Myb domain
SMARTSM007172.4E-16260308IPR001005SANT/Myb domain
PfamPF002496.0E-16264303IPR001005SANT/Myb domain
CDDcd001674.42E-13264306No hitNo description
Gene3DG3DSA:1.10.10.606.1E-22264308IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MFPSVSVSTP NSLMVLDTNL RENYASQPIH LQENYLLKPR MKDEQLPFVA PNSSQCFLQD  60
FNHIDQFHPV HGSSSSNQVF GVQTQNFDPF DNAACAQTDF EVYDGNNKSF AENNGSGHAH  120
LIDNFQYDGY SLNIPRRNIQ VDMMVENHSY FPFNNPSETK PLNYVVPDDE VSSIAPTNYY  180
QRAGLNRNNR LSPTTRRAFK ARKKSNIVKG QWTVDEDRLL IQLVEQYGMR KWSHIAQKLP  240
GRIGKQCRER WHNHLRPDIK KDIWTDEEDK ILIQAHTEIG NKWAEIAKRL PGRTENSIKN  300
HWNATKRRQY SKRKCRSKYP RSTLLQEYIK SLNLDQNPPR DFRKRSSVNA KKITNTFTST  360
STSTSKAAQV PPQLHITNQF CPNDRSVPNY ELNDFCLDDN LFEEGCGIDS LLDDMSSVPT  420
LDGEKGFDEK QCDNKGSMQV VNVVEHQFET GIEVKKELDL VEMISQITA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-452073092104C-Myb DNA-Binding Domain
1msf_C5e-452073092104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508897.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192134.10.0transcription factor MYB98-like
TrEMBLA0A3Q7XF790.0A0A3Q7XF79_CICAR; transcription factor MYB98-like
STRINGXP_004508897.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-92myb domain protein 98