PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508727.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 444aa MW: 49203.1 Da PI: 6.5645

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.4e-38	111	171	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfC+aC+ryWt+GGa rnvPvG+grrknk+s XP_004508727.1 111 PDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCRACQRYWTAGGATRNVPVGAGRRKNKNSA 171 78999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	108	168	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	113	169	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.435	115	169	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	117	153	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MQETRDSTIS LFGHKIPLSA GDRDGGEGYE GEQELHEEKY QTHEDPEAEN VTERVQETYP 60 PSNLEEAENS GNSSPEGITN LKTPSIEEEI AKSKDDKSEK EQSQEKTLKK PDKLLPCPRC 120 NSMDTKFCYY NNYNVNQPRY FCRACQRYWT AGGATRNVPV GAGRRKNKNS ASHYNHITIS 180 EALQEATIDS PNGTHIHSLK SNGRVISFGS DAPICDSMAS VQNTGEKKVV DGTRNRFHGL 240 EDQSLHGENG DEYSSVSNSM GESNKSTTST FPQPVLQNNG FLPQLPCMPN VPWPYTWNSP 300 VPPPHGLCPL GFSFPIYQPT FWNVPWFPSH SYASSSMSPS SGPNSPTLGK HSRDSEQDSS 360 HKEPSKHRNG RVLVPKTLRI DDPSEAAKSS IWTTLGIKNE SASRGGMFKA FQSKRGERNG 420 IETSSVLMAN PAALSRSLNF HENF

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MQETRDSTIS LFGHKIPLSA GDRDGGEGYE GEQELHEEKY QTHEDPEAEN VTERVQETYP  60
PSNLEEAENS GNSSPEGITN LKTPSIEEEI AKSKDDKSEK EQSQEKTLKK PDKLLPCPRC  120
NSMDTKFCYY NNYNVNQPRY FCRACQRYWT AGGATRNVPV GAGRRKNKNS ASHYNHITIS  180
EALQEATIDS PNGTHIHSLK SNGRVISFGS DAPICDSMAS VQNTGEKKVV DGTRNRFHGL  240
EDQSLHGENG DEYSSVSNSM GESNKSTTST FPQPVLQNNG FLPQLPCMPN VPWPYTWNSP  300
VPPPHGLCPL GFSFPIYQPT FWNVPWFPSH SYASSSMSPS SGPNSPTLGK HSRDSEQDSS  360
HKEPSKHRNG RVLVPKTLRI DDPSEAAKSS IWTTLGIKNE SASRGGMFKA FQSKRGERNG  420
IETSSVLMAN PAALSRSLNF HENF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508727.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508727.1	0.0	cyclic dof factor 3
TrEMBL	A0A1S2YRE5	0.0	A0A1S2YRE5_CICAR; cyclic dof factor 3
STRING	XP_004508727.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-106	cycling DOF factor 3