PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508691.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 564aa    MW: 62980.5 Da    PI: 8.5691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028105123321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C+ Cg+sF ++  L  H++
  XP_004508691.1 105 CKECGRSFVSWKALFGHMK 123
                     ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.5E-51133IPR007087Zinc finger, C2H2
PROSITE profilePS501579.641138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-71133No hitNo description
SMARTSM003550.111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-798125No hitNo description
SMARTSM003550.081103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596103130IPR007087Zinc finger, C2H2
PfamPF139121.7E-7105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
PfamPF139121.4E-10392416IPR007087Zinc finger, C2H2
SuperFamilySSF576675.49E-7392414No hitNo description
SMARTSM003550.14392414IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201392419IPR007087Zinc finger, C2H2
PROSITE patternPS000280394414IPR007087Zinc finger, C2H2
SuperFamilySSF576675.49E-7476503No hitNo description
PfamPF139121.8E-11481504IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141481503IPR007087Zinc finger, C2H2
SMARTSM003550.17481503IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280483503IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEKDQVQEFK HACKFCNKSF PCGRSLGGHM RSHINNLSSE TEQKEKLPIK KLPSLTNNNG  60
GSGGSCIGSE AATNAGYVLR ENPKKTWRIS DSSEDNLLDV YDKLCKECGR SFVSWKALFG  120
HMKCHSDKER VCNSLEDQDS SWTNNNVNSK MMIMDSSQSD NEITTAPNKR RRSKRTRTRY  180
MVAAAAATTS SLSFANIPSY SSLSEVEQEQ EEVAMSLIML SKDVSPWSGL QSLATAESSD  240
NNSPYFEPRT RSSVRTNLVT KFDANNNSSI TATINIAKLM KKSEHNKCEL GNSVSKNFNF  300
KGKSLEILDT DKGFRMNKVT KSELDYLSTT LEDSEVENGK NRVNGRRTES VLSKKKLLDS  360
ELKSSSLKNC VNKPFHDEDE FIKNNSNKRG KFECTTCNKI FHSYQALGGH RASHKKTKGC  420
FASKIENSEN SIETDLSPEQ TVAAYVKHGH NNISLSRGLG RSEYVEKIAD TVKETKKIKG  480
HECPICFKVF QSGQALGGHK RSHMVAAGVV SESRVVVHEQ VPQIRDFLDL NLPAATEEES  540
NSHADSNRPW WIVEGNHKQE ELVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174NKRRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508691.10.0uncharacterized protein LOC101491614
TrEMBLA0A1S2YRB80.0A0A1S2YRB8_CICAR; uncharacterized protein LOC101491614
STRINGXP_004508691.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-30C2H2-like zinc finger protein