PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508651.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 307aa MW: 33361.4 Da PI: 7.2508

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	33	92	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s+ XP_004508651.1 33 HQALKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSN 92 6899****************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-33	34	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-25	35	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MQEIHSIGGG TKFFAAGTAD RRLRPHNNNH HNHQALKCPR CDSINTKFCY YNNYNLSQPR 60 HFCKNCRRYW TKGGVLRNVP VGGGCRKSKR SNKPKNSSSS SETTALPGTP PETENKSNSH 120 SSSESSSLTA AAVTEAVSTP SATNTNSKKT QESKLLSHVN QSNTDLGNDS LEQGTGDCGI 180 FSEIANFTSL ITSSNEALPF EFGNGNGNDF QWQHQKVMTV TGNQPNHNED VLKLLPGNMG 240 AGASLMDGVD FSALQNKTSN GGFGPLDWHG DGGADHGLFD LPNTVDQGYW AHTHWSDQDH 300 SNLFHLP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508651.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508651.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	A0A1S2YR75	0.0	A0A1S2YR75_CICAR; dof zinc finger protein DOF5.4
STRING	XP_004508651.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	5e-33	OBF binding protein 4