PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508645.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 570aa MW: 63056.9 Da PI: 8.6686 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.8 | 1.7e-17 | 270 | 319 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq XP_004508645.1 270 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 319 889*************************9....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-24 | 265 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-19 | 266 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.653 | 268 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-15 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.50E-15 | 270 | 323 | No hit | No description |
SMART | SM00353 | 1.5E-13 | 274 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MELSPARPCG AEGAGRKPTH DFLSLYSNST AEQDPRPSAQ ASYLKTHDFL RPLEQFETNS 60 GAKEEATDEI SSVVQKQPTL PAPASVERLL PGGIGTYSIS HVSYANNNNN QRVPKPETSL 120 FTVHQATSTD RNDNNSNCSS HTSSGFTLWE ESEIKKGKIG KENNVGEKPI IGVAESAAKL 180 GHWTSTERTS QSFSNNRHGS FNSRSSSLTT GQKNQSFMEM MKSAKDCAQD EELENEGTFF 240 LKRESSDTQR GDLRVRVDAK STDQKPNTPR SKHSATEQRR RSKINDRFQM LRELIPHSDQ 300 KRDKASFLLE VIEYIHFLQE KVHKYEGSFQ GWNNEPEKLM PWRNNDRPAE KFQPRGANSG 360 SNPSPTLLFA SKVDEKNITI PPTIHGGIHN AESGLSTTTA FKTMDHQSGI LNKAFPIPIT 420 SQPNFFTSTQ TCGSGGVVSQ LRHRLASDAE NTIYQPSVES QAMTSTSEKL KEKELSIEGG 480 AISISSVYSQ GLLDTLTQAL QSSGVDLSQA NISVQIELGK QANIRPTVPM SMRVPKDDED 540 PSKNQRKMRS RVTSSDKSDQ ASKKLKTCRS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508645.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-31 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508645.1 | 0.0 | transcription factor BIM1 | ||||
TrEMBL | A0A1S2YR68 | 0.0 | A0A1S2YR68_CICAR; transcription factor BIM1 | ||||
STRING | XP_004508645.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7252 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.5 | 1e-116 | bHLH family protein |