PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NF-YB | ||||||||
Protein Properties | Length: 146aa MW: 16733.7 Da PI: 5.0513 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.7 | 7.9e-54 | 21 | 116 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdr+lPianv+rimk++lP+nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal+tlGf+dy+ep++ yl +yrele++ XP_004508609.1 21 KEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPMRRYLIRYRELEAD 115 89*******************************************************************************************99 PP NF-YB 97 k 97 + XP_004508609.1 116 R 116 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-51 | 16 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.63E-39 | 23 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-27 | 26 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-17 | 54 | 72 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 57 | 73 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-17 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 1.3E-17 | 92 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MMDNNNIGGS TSNNIENGSI KEQDRLLPIA NVGRIMKQIL PQNAKISKES KETMQECVSE 60 FISFVTSEAS EKCRKERRKT VNGDDICWAL GTLGFDDYAE PMRRYLIRYR ELEADRNTNN 120 INVQDRGNSP QENDHELFMF PPRGSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-44 | 20 | 111 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-44 | 20 | 111 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508609.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174371 | 1e-114 | AC174371.23 Medicago truncatula chromosome 8 clone mth2-50f21, complete sequence. | |||
GenBank | BT137051 | 1e-114 | BT137051.1 Medicago truncatula clone JCVI-FLMt-1H17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508609.1 | 1e-106 | nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O82248 | 2e-53 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A1S2YR61 | 1e-104 | A0A1S2YR61_CICAR; nuclear transcription factor Y subunit B-4-like | ||||
STRING | XP_004508609.1 | 1e-105 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 4e-55 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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