PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 40330.7 Da PI: 8.482 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.5 | 1.4e-39 | 110 | 245 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssgkaa 91 k+drhski T++g+RdRR+Rls+++a++fF Lqd+LGf k+skt+eWLl+++k +ik+l++ sss+ sec e+ +ss +n+ +++++ XP_004508574.1 110 SKRDRHSKIKTAKGLRDRRMRLSLDVAKKFFGLQDMLGFEKASKTVEWLLNKSKLEIKQLAREknlqndSSSTTSEC--EEGVSSLDNNDHQQQQ 202 69*************************************************************88854433333555..5555555555555555 PP TCP 92 ksaa.kskksqksaasalnlakesrakarararertrekmrik 133 k k+++s+++ + +++++ r+kar+rarertr+k + + XP_004508574.1 203 KIMLvKRSSSTNKVSRKSAFNCIGREKARERARERTRQKLNAR 245 5555688888888998999999*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.2E-38 | 110 | 242 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.972 | 111 | 169 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.836 | 224 | 241 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MYSSNSSLNG NNNNLTGTSF CSSTPFTFES NSSSSTSKHH QNTCFPPSPF SFIQFPYDTF 60 EDNNQIFLLQ EQDDHIQMNV KNKEEEEDKG KTVLVVVDEH KKNVQRKRSS KRDRHSKIKT 120 AKGLRDRRMR LSLDVAKKFF GLQDMLGFEK ASKTVEWLLN KSKLEIKQLA REKNLQNDSS 180 STTSECEEGV SSLDNNDHQQ QQKIMLVKRS SSTNKVSRKS AFNCIGREKA RERARERTRQ 240 KLNARIRDVN IVDQSNSKQC VNNNNNNNNW NPFEECAVNN SSFDVKMINH EAKEHSELED 300 EENSLFINMT KWSPTFMFNN SSILQQHHQY AQFQCLEKPW EDYNNTI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508574.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508574.1 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | A0A1S2YR21 | 0.0 | A0A1S2YR21_CICAR; transcription factor TCP12 | ||||
STRING | XP_004508574.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 5e-21 | TCP family protein |