PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508571.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 300aa    MW: 32896.4 Da    PI: 7.2303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09859347
                     SS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47
                      W+ +E++ + +a++++  +        +W+ Ia++++ ++t +++k ++q +
   XP_004508571.1  8 TWSYDEEKAFENAIAMHWIHededsketQWENIASCVP-NKTMEEVKQHYQVL 59
                     6*****************99******************.************86 PP
2Myb_DNA-binding38.92e-12135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   XP_004508571.1 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.288164IPR017930Myb domain
SMARTSM007173.9E-5562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-5760IPR009057Homeodomain-like
CDDcd001671.16E-7860No hitNo description
PfamPF002499.0E-7859IPR001005SANT/Myb domain
SuperFamilySSF466896.39E-9966IPR009057Homeodomain-like
PROSITE profilePS5129416.873128184IPR017930Myb domain
SuperFamilySSF466897.18E-17130185IPR009057Homeodomain-like
SMARTSM007172.3E-10132182IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.2E-17132182IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-11133178IPR009057Homeodomain-like
CDDcd001671.01E-9135180No hitNo description
PfamPF002497.4E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSSSSGTTWS YDEEKAFENA IAMHWIHEDE DSKETQWENI ASCVPNKTME EVKQHYQVLV  60
DDVSAIEAGH VSFPNYANEE TSSSNKDSSS SKATTTSSDK RSSCNFGSGF SGLGHDSKGG  120
LSRSSSEQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITS VNNGDVASNH HHHQVPITGQ HSSTIASSTM SLGQSMKHRV  240
QPHGHMPVGG GLGMYGAPVG HPVAAPPPHM ASAVGTPVML PHPPYVVPLA YPMAPPTMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14276473RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508571.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967722e-90BT096772.1 Soybean clone JCVI-FLGm-21M9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508571.10.0transcription factor MYBS1
SwissprotB8A9B23e-80MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH593e-80MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A1S2YR120.0A0A1S2YR12_CICAR; transcription factor MYBS1
STRINGXP_004508571.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-65MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]