PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 36958.7 Da PI: 8.1762 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.4e-09 | 72 | 96 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C f G C+ G++C+FaHg XP_004508522.1 72 FKTRICVKFKL-GSCRNGENCNFAHG 96 69*********.*************9 PP | |||||||
2 | zf-CCCH | 28.6 | 2.4e-09 | 136 | 159 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGd+C+F H XP_004508522.1 136 KMKLCKKFYNGEECPYGDKCNFLH 159 789*******66************ PP | |||||||
3 | zf-CCCH | 36.3 | 9.6e-12 | 211 | 236 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++Gd C+FaHg XP_004508522.1 211 WKTKLCLKWEHTGHCPFGDDCHFAHG 236 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-13 | 68 | 104 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-8 | 69 | 102 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-6 | 71 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.943 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-6 | 72 | 96 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4E-4 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.361 | 134 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-7 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-7 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-9 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-15 | 206 | 241 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-10 | 209 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-6 | 210 | 237 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 210 | 238 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-9 | 211 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MTFPDNIPTF RMSPPHFATN SDVIEVRPQF PMNNQHFDQP PSFKRARISD NNHPPRMMVQ 60 PPSNKGTSHI FFKTRICVKF KLGSCRNGEN CNFAHGVEDI RKPPPNWQEL VGSRNDEQLH 120 ALVAGNWDDD QKIIHKMKLC KKFYNGEECP YGDKCNFLHE DPAKFRDDSR NSRESTTISI 180 GTNGSPKSYG DGTNNLDGNR AVNKQTKGTY WKTKLCLKWE HTGHCPFGDD CHFAHGLEEL 240 QAFGGRVEAE IAGAVANSTK AIIIPTSVSA IDAPPTTLIA SQPVAKEEEQ TKKHLLRLKV 300 NKKINRIYGD WIDDLPLVLH NLPSTVET |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508522.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508522.1 | 0.0 | zinc finger CCCH domain-containing protein 39 isoform X1 | ||||
Refseq | XP_004508523.1 | 0.0 | zinc finger CCCH domain-containing protein 39 isoform X1 | ||||
Swissprot | Q9LT81 | 3e-91 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A1S2YQX3 | 0.0 | A0A1S2YQX3_CICAR; zinc finger CCCH domain-containing protein 39 isoform X1 | ||||
STRING | XP_004508522.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-93 | C3H family protein |