PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508520.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 520aa    MW: 59167 Da    PI: 6.561
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-0684107327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     t++C +f+  G+C+ G+rC+F Hgp
  XP_004508520.1  84 TVPCFYFFN-GFCNKGNRCSFLHGP 107
                     889999999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.286635IPR000571Zinc finger, CCCH-type
PfamPF156632.1E-11761No hitNo description
SMARTSM003560.0068734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.6153763IPR000571Zinc finger, CCCH-type
SMARTSM003560.373962IPR000571Zinc finger, CCCH-type
SMARTSM003560.001381107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.10381108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-581106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-684109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDEDLLKRNT DCVYFLASPL TCKKGAECEY RHHEIARLNP RDCWFWLAGN CLNPTCAFRH  60
PPLDGHTGVP SEPLQSSVPA NKTTVPCFYF FNGFCNKGNR CSFLHGPSDS LLTVKPLKND  120
NGSSKALNSE NKTSSGNITC VASAPSETHF DRSLSVPKAL SDFKLQPKEV LQVPLPENVK  180
QKGDCLELSA SDYKETAMTR SNSLLPDDGV AHNMSHLSTE QSSDEQINSH VEPEERWESS  240
PGFDVLVHDE SGNLGYEDDS EYLPVLDMNE QELNEQYSGY EFKDTVEYDT LCSDTDILYE  300
QGTCDDYRCF DSDFTNANGR KVCGYSREMV VDSIFSRKRI RMSAAEMSDC DSDLDLRDHL  360
RRRREGNVPP VTGFLRRHDL PSLMVRNSVR HQRQGTGQRQ NRRLTSQLEF SSMREVETLS  420
IANKERFRPF QQNRPRKHYG ENLDNRPFLS SMVSRKPVVK QQRFIQESTT FSGPKTLAEI  480
KEEKKKKKKV GESSHRESIS AGFQDPKPLS EILKDRRTIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508520.10.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A1S2YQW90.0A0A1S2YQW9_CICAR; zinc finger CCCH domain-containing protein 32-like
STRINGXP_004508520.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823