PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508343.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 344aa    MW: 38575.7 Da    PI: 8.7114
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.42.9e-2145135186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                     +W+ +e+laLi+ +r+++ +l+rg+lk+++W+ev++++         +++p+qC++k+e+l+kry+ + +++++   s+  s++++f+ ++
  XP_004508343.1  45 CWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVsqrcPNASPSKTPVQCRHKMEKLRKRYRTEIQRARSLpVSRFNSSWVHFKLMD 135
                     7*********************************999966656667799*************************97799999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2044137No hitNo description
PROSITE profilePS500906.16846106IPR017877Myb-like domain
SMARTSM005955.1E-1053142IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MASSPPNSTL PPLPDPPIAL PLALPAPLPL PLALPPSTRR LPPPCWSPDE TLALIDSYRD  60
KWYSLGRGNL KATHWQEVAD AVSQRCPNAS PSKTPVQCRH KMEKLRKRYR TEIQRARSLP  120
VSRFNSSWVH FKLMDSMEKG PSPVKPENDS DSPDDDEEDD HDQDLYEEIK NGHGSNTRSI  180
NKLYKNGYGS GVGVGIGGGV GGGYRIRFPT AQPEFKFGSE QKYNPNPNPN PNLNHHYGTP  240
MAAATTMTKV LGNKRERDPL GEIVSAIKLL GDGFVRMEQM KMEMAREIEG MRMEMEMKRT  300
EMILESQQRI VEAFAKAVSD NDDYNYNNNS KKPINKRIPS PQQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508343.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A1S2YQH70.0A0A1S2YQH7_CICAR; trihelix transcription factor ASIL1-like
STRINGXP_004508343.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-60Trihelix family protein