PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 479aa MW: 50295.2 Da PI: 8.261 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.7e-12 | 44 | 69 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_004508292.1 44 DEADCIYYLRTGFCGYGSRCRFNHPR 69 6799********************96 PP | |||||||
2 | zf-CCCH | 37.9 | 2.9e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_004508292.1 90 QPVCQYYMRTGSCKFGASCKYHHPR 114 689********************96 PP | |||||||
3 | zf-CCCH | 35.1 | 2.2e-11 | 136 | 160 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ XP_004508292.1 136 EKECSYYVKTGQCKFGATCKFHHPQ 160 679********************97 PP | |||||||
4 | zf-CCCH | 37.2 | 4.7e-12 | 301 | 326 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++C+++H+p XP_004508292.1 301 DQPECHHYMKTGECKFGSSCRYHHPP 326 689*********************97 PP | |||||||
5 | zf-CCCH | 32.9 | 1.1e-10 | 349 | 372 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++a+ G+Ck+G+ CkF H++ XP_004508292.1 349 QPCTHYAQRGICKFGPACKFDHPM 372 69********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.295 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 44 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-10 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 48 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-7 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.779 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-10 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 92 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-9 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-5 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.558 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 302 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-7 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.652 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.33E-6 | 348 | 375 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 349 | 370 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 349 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MERYGRTNEG SQSDPTPEWN VGGGDTTLEG YGLVGGESYP QRPDEADCIY YLRTGFCGYG 60 SRCRFNHPRD RGAVIGAARI AGEYPERVGQ PVCQYYMRTG SCKFGASCKY HHPRQAAGTT 120 TPVSLNYYGY PLRVGEKECS YYVKTGQCKF GATCKFHHPQ PAGVQMLPPS PVPQVSPLPM 180 PVPSPIYQTV QPPSGPSSQQ YGVLVARPPL LPGSLFQGPY GPMVVSPTMV PFPGWSPYQA 240 PGGSPVLPSS TPLSVGSTQL YGITQLPSPA TAYTGPYQSS GSSTGPSGSI QKDHSLPERP 300 DQPECHHYMK TGECKFGSSC RYHHPPDTGA PKGNVNLSPI GLPLRPGAQP CTHYAQRGIC 360 KFGPACKFDH PMGSLSYSPS ASSLADMPVA PYPVGSSIAT LAPSSSSSEL RPELASGSSM 420 ESASSRMSSS TSTSTASVGL TLSTVGPVSQ SSIQPSAPSS SSLAAPSATT SSTVSHTSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508292.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174327 | 1e-123 | AC174327.15 Medicago truncatula chromosome 8 clone mth2-108e23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508292.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Refseq | XP_027192601.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Refseq | XP_027192602.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q84W91 | 1e-151 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1S2YQD3 | 0.0 | A0A1S2YQD3_CICAR; zinc finger CCCH domain-containing protein 34 | ||||
STRING | XP_004508292.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-125 | C3H family protein |