PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508292.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 479aa    MW: 50295.2 Da    PI: 8.261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-124469227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG+C yG+rC+F+H++
  XP_004508292.1 44 DEADCIYYLRTGFCGYGSRCRFNHPR 69
                    6799********************96 PP

2zf-CCCH37.92.9e-1290114327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_004508292.1  90 QPVCQYYMRTGSCKFGASCKYHHPR 114
                     689********************96 PP

3zf-CCCH35.12.2e-11136160327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++ +tG+Ck+G++CkF+H++
  XP_004508292.1 136 EKECSYYVKTGQCKFGATCKFHHPQ 160
                     679********************97 PP

4zf-CCCH37.24.7e-12301326227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G++C+++H+p
  XP_004508292.1 301 DQPECHHYMKTGECKFGSSCRYHHPP 326
                     689*********************97 PP

5zf-CCCH32.91.1e-10349372427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C ++a+ G+Ck+G+ CkF H++
  XP_004508292.1 349 QPCTHYAQRGICKFGPACKFDHPM 372
                     69********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2954270IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-54269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64470IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-104469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-54869IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77987115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-690115IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-1090114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-592114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6134161IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5135160IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-9136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4139159IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558299327IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6302327IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652345373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6348375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4349370IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8349372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MERYGRTNEG SQSDPTPEWN VGGGDTTLEG YGLVGGESYP QRPDEADCIY YLRTGFCGYG  60
SRCRFNHPRD RGAVIGAARI AGEYPERVGQ PVCQYYMRTG SCKFGASCKY HHPRQAAGTT  120
TPVSLNYYGY PLRVGEKECS YYVKTGQCKF GATCKFHHPQ PAGVQMLPPS PVPQVSPLPM  180
PVPSPIYQTV QPPSGPSSQQ YGVLVARPPL LPGSLFQGPY GPMVVSPTMV PFPGWSPYQA  240
PGGSPVLPSS TPLSVGSTQL YGITQLPSPA TAYTGPYQSS GSSTGPSGSI QKDHSLPERP  300
DQPECHHYMK TGECKFGSSC RYHHPPDTGA PKGNVNLSPI GLPLRPGAQP CTHYAQRGIC  360
KFGPACKFDH PMGSLSYSPS ASSLADMPVA PYPVGSSIAT LAPSSSSSEL RPELASGSSM  420
ESASSRMSSS TSTSTASVGL TLSTVGPVSQ SSIQPSAPSS SSLAAPSATT SSTVSHTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743271e-123AC174327.15 Medicago truncatula chromosome 8 clone mth2-108e23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508292.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_027192601.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_027192602.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-151C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S2YQD30.0A0A1S2YQD3_CICAR; zinc finger CCCH domain-containing protein 34
STRINGXP_004508292.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-125C3H family protein