PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004508164.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

CAMTA

Protein Properties

Length: 922aa MW: 104818 Da PI: 7.3135

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004508164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.3	4.4e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e + rwl+++ei+a+L n++ +++ ++ + pksg+++Ly+rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np+f r XP_004508164.1 30 EEaRIRWLRPNEIHAMLCNHKYFTVNVKPMNLPKSGTIVLYDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVR 124 44599**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ XP_004508164.1 125 RCYWLLDKSLEHIVLVHYRETQ 146 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.091	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-74	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.4E-45	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.22E-14	369	456	IPR014756	Immunoglobulin E-set
Pfam	PF01833	4.1E-5	370	455	IPR002909	IPT domain
SuperFamily	SSF48403	4.66E-19	546	667	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.4E-8	558	634	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.5E-17	560	667	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.13E-16	563	664	No hit	No description
PROSITE profile	PS50297	16.282	572	637	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.1E-6	605	634	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.434	605	637	IPR002110	Ankyrin repeat
SMART	SM00248	4200	644	675	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.41E-8	711	819	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	17	768	790	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.906	770	798	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.19	791	813	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.913	792	816	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.014	796	813	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	871	893	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.041	873	901	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MANNLTGQLV GSEIHGFHTL QELDVRGIME EARIRWLRPN EIHAMLCNHK YFTVNVKPMN 60 LPKSGTIVLY DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP 120 NFVRRCYWLL DKSLEHIVLV HYRETQESQG SPITPVNSNS TTASDPTAPW ILSEEIDSGT 180 TTAYAGEIND NITVRSHELK LHEINTLEWD DLVVANDLNT STAPNGGKVP YFGQQNQILL 240 NGNFSNVSTH ASTEIRSFDN STQPMAASNS VPYSFSESVT LQTVDSQGNR NEQRNHPVAS 300 GGVDSLDTLF NGRLQSQDSF GMWVNQIMSD SPCSVDELAL KSSVSSINEP YSSLVLDNQQ 360 LSLPEQVFNL TDVSPACASS TEKSQVLVTG FFHEDYMHIS KTNLMCVCGD ASVPAEIVHD 420 GVYRCWIPPH SPGLVNLYMS FDGHKPISQV VNFEYRTPIL HDPIESVEEK NNWDEFRLQM 480 RLAYLLFAKQ QSLDVIASKV SPSRLKEARE FSLKTSFISN SWQYLMKSTE DNQIPFSQAK 540 DALFGIALKN RLKEWLAERI VLGCKTTEYD AQGQSVIHLC AILGYTWAVT LFSWSGLSLD 600 FRDKFGWTAL HWAAYYGREK MVATLLSAGA KPNLVTDPTQ QNPDGCTAAD LAYNRGYHGL 660 SAYLSEKSLV EQFNDMSLAG NISGSLETSM DDPVNSENFT EEQIYMKDTL AAYRTAADAA 720 ARIQTAYREH SLKLQTEAVE FSSPEAEARK IVAAMKIQHA FRNFETKKVM AAAARIQHRF 780 RAWKIRREFV NKRLQAIKIQ AAFRCFQQRK QYRKIIWSVG VVEKAVLRWR LKRKGFRGLQ 840 INTAEAAGDQ NQHSDVEEEF FRTGRKQAEE RVERSVIRVQ AMFRSKKAQE DYRRMKLALN 900 QAKLEREYEK MLSTEVEMEL KT

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MANNLTGQLV GSEIHGFHTL QELDVRGIME EARIRWLRPN EIHAMLCNHK YFTVNVKPMN  60
LPKSGTIVLY DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
NFVRRCYWLL DKSLEHIVLV HYRETQESQG SPITPVNSNS TTASDPTAPW ILSEEIDSGT  180
TTAYAGEIND NITVRSHELK LHEINTLEWD DLVVANDLNT STAPNGGKVP YFGQQNQILL  240
NGNFSNVSTH ASTEIRSFDN STQPMAASNS VPYSFSESVT LQTVDSQGNR NEQRNHPVAS  300
GGVDSLDTLF NGRLQSQDSF GMWVNQIMSD SPCSVDELAL KSSVSSINEP YSSLVLDNQQ  360
LSLPEQVFNL TDVSPACASS TEKSQVLVTG FFHEDYMHIS KTNLMCVCGD ASVPAEIVHD  420
GVYRCWIPPH SPGLVNLYMS FDGHKPISQV VNFEYRTPIL HDPIESVEEK NNWDEFRLQM  480
RLAYLLFAKQ QSLDVIASKV SPSRLKEARE FSLKTSFISN SWQYLMKSTE DNQIPFSQAK  540
DALFGIALKN RLKEWLAERI VLGCKTTEYD AQGQSVIHLC AILGYTWAVT LFSWSGLSLD  600
FRDKFGWTAL HWAAYYGREK MVATLLSAGA KPNLVTDPTQ QNPDGCTAAD LAYNRGYHGL  660
SAYLSEKSLV EQFNDMSLAG NISGSLETSM DDPVNSENFT EEQIYMKDTL AAYRTAADAA  720
ARIQTAYREH SLKLQTEAVE FSSPEAEARK IVAAMKIQHA FRNFETKKVM AAAARIQHRF  780
RAWKIRREFV NKRLQAIKIQ AAFRCFQQRK QYRKIIWSVG VVEKAVLRWR LKRKGFRGLQ  840
INTAEAAGDQ NQHSDVEEEF FRTGRKQAEE RVERSVIRVQ AMFRSKKAQE DYRRMKLALN  900
QAKLEREYEK MLSTEVEMEL KT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004508164.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC126780	0.0	AC126780.18 Medicago truncatula chromosome 8 clone mth2-10n4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004508164.1	0.0	calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1S2YQ39	0.0	A0A1S2YQ39_CICAR; calmodulin-binding transcription activator 5 isoform X2
STRING	XP_004508164.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]