PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508108.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 305aa    MW: 35418.6 Da    PI: 7.6066
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++v+ +G g+W+t a   g++Rt+k+c++rw++yl
   XP_004508108.1 30 RGPWTIDEDLTLINYVATHGEGRWNTLALDAGLKRTGKSCRLRWLNYL 77
                     89********************************************97 PP
2Myb_DNA-binding513.3e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++++++ +G++ W++Ia++++ gRt++++k++w++
   XP_004508108.1  83 RGNITLEEQLLILELHTHWGNR-WSKIAQYLP-GRTDNEIKNYWRT 126
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.712577IPR017930Myb domain
SuperFamilySSF466891.76E-3027124IPR009057Homeodomain-like
SMARTSM007171.3E-122979IPR001005SANT/Myb domain
PfamPF002498.3E-163077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-213184IPR009057Homeodomain-like
CDDcd001672.63E-93277No hitNo description
PROSITE profilePS5129423.68678132IPR017930Myb domain
SMARTSM007171.2E-1382130IPR001005SANT/Myb domain
PfamPF002493.5E-1483126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2285130IPR009057Homeodomain-like
CDDcd001671.12E-6103126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDVIKERENN KKKKSMVSSS CSEDEMDLRR GPWTIDEDLT LINYVATHGE GRWNTLALDA  60
GLKRTGKSCR LRWLNYLRPD VRRGNITLEE QLLILELHTH WGNRWSKIAQ YLPGRTDNEI  120
KNYWRTRVQK LAKHLKCDVN SKQFKDSMRN LWMPRLVERI QAAATATTTT SVAANNTHTI  180
NNRDKLLMKS SPTIINDEFV SSQPHMTQSY STQEYNNTSS SSNSFGNNKV STTLFDLDDN  240
SNYYTKDNNP NPNLDYYQPS HQHSFSDCIM EPNTPWIMQS GDSSDIFWNA ENMLFLQQQL  300
MNDTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24271304106B-MYB
1h8a_C5e-242712424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413KERENNKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508108.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508108.10.0transcription factor MYB108
SwissprotQ10MB49e-84MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1S2YPY70.0A0A1S2YPY7_CICAR; transcription factor MYB108
STRINGXP_004508108.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-79myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]