PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508021.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 1030aa    MW: 115992 Da    PI: 7.4017
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-2131132199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ F + ++L +gD+v+F   ++++
  XP_004508021.1  31 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELIAKDLHDNAWTFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFI--RDEK 122
                     99*****************************9545444.38************************************************..5678 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_004508021.1 123 QQLLLGLRRA 132
                     8899999986 PP
2Auxin_resp122.62.9e-40157239183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete+s  rr++G ++g+sdldp+rW+nS+Wr+L+
  XP_004508021.1 157 AAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYTGAITGISDLDPIRWKNSQWRNLQ 239
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-4421160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-4123146IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-1830122No hitNo description
PROSITE profilePS5086311.80131133IPR003340B3 DNA binding domain
PfamPF023621.5E-1931132IPR003340B3 DNA binding domain
SMARTSM010196.8E-2131133IPR003340B3 DNA binding domain
PfamPF065072.3E-35157239IPR010525Auxin response factor
PfamPF023092.1E-9898989IPR033389AUX/IAA domain
PROSITE profilePS5174524.191903996IPR000270PB1 domain
SuperFamilySSF542778.83E-8917981No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MTLQPVNQYD KEAMLASDIG LKQNRQPTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL  60
DYSMQPPAQE LIAKDLHDNA WTFRHIYRGQ PKRHLLTTGW SVFISTKRLF AGDSVLFIRD  120
EKQQLLLGLR RANRQQPALS SSVISSDSMH IGILAAAAHA AANNSPFTIY YNPRASPSEF  180
VVPLAKYNKA MYTQVSLGMR FRMMFETEES GVRRYTGAIT GISDLDPIRW KNSQWRNLQV  240
GWDESTAGER PSRVSVWDIE PVVTPFYICP PPFFRPKFPR QPGMSDDESN IENAFKRAMP  300
WIGDEFGMND ASSSFFPGLS LVQWMGMQQN NQFSAAQSGC FPSMLSSNTL QGNLGTDDPS  360
KLLSFQAPVL SAPNLQFNKP NLPNQINQLQ QPPVSWPQQQ QQLQQQQQQQ QLQQQQQQQQ  420
QLQQQQQQKL QSLSQIPTNQ LQQQRQQQLT ESQNLTLLQQ QMPQQLGQQT QKHLQSSQQA  480
ITNNGVVSSN QITNQFVQQP SAYAQLQQQQ LLSGSIPHQQ SFQSANKNTF PLTSLPQDSQ  540
FQQRIDSQAS LLQRQQQQTQ LQQSQLQVLQ QNMPQRVPPN PPVTQTSQQN ASEQQLHMQF  600
LHKLQQQQQL LSTSSPLLQS QLLQQQNTHQ QIQQLPQLPT SQHHTQQLSN NAFSTEKLLN  660
SNNLSSSSLM QSQHLPVNRT QNTQKPLTIT RAPSTLTDGE APSCSTSPST NNCPVSPPNL  720
LKRNQQVPNM LGGCLLVEPA SNMIRELQSK TDKHIKHEFA NVKGSDQLKY KRTTIDQLEA  780
SSGTSYCLDP GNAQQNFPLS NFCMEGDVQS NPRNNLLFDS SFDGLMPDTM LSRGYDSQKD  840
LQNLLSNYGG APRDIETELS TADISSQSFG LPNMPGCSND VGINDTSGVL NNGLRANQTQ  900
RMRTYTKVQK RGSVGRCIDV TRYKKYDELR YDLARMFGIE GQLEDPQRTD WKLTYVDHEN  960
DILLVGDDPW EEFVRNVQSI KILSSAEVQQ MSLDGDLGNV QLPNQACSGT DSGNAWRGQY  1020
DDNSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1271260128388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444830.0AC144483.10 Medicago truncatula chromosome 8 clone mth2-12f13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508019.10.0auxin response factor 19 isoform X2
TrEMBLA0A1S2YPR00.0A0A1S2YPR0_CICAR; Auxin response factor
STRINGXP_004508018.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19