PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507986.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 310aa    MW: 35106.4 Da    PI: 7.7414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l ++++++G g W+  +++ g++R++k+c++rw++yl
   XP_004507986.1 14 RGAWTAHEDKILTEYITLHGEGKWRNLPKRAGLRRCGKSCRLRWLNYL 61
                     89********************************************97 PP

2Myb_DNA-binding51.62.2e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
   XP_004507986.1  67 RGNISSDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                      78999*****************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.173961IPR017930Myb domain
SuperFamilySSF466891.64E-2712108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-131461IPR001005SANT/Myb domain
CDDcd001677.74E-91661No hitNo description
PROSITE profilePS5129424.56862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2465116IPR009057Homeodomain-like
SMARTSM007173.4E-1566114IPR001005SANT/Myb domain
PfamPF002492.6E-1467112IPR001005SANT/Myb domain
CDDcd001677.84E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAH EDKILTEYIT LHGEGKWRNL PKRAGLRRCG KSCRLRWLNY  60
LRPDIKRGNI SSDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVKDIH  120
KQHTNMTSSS TSHSAAPNPK ITQKHKNLKQ QNFPSLLPSP PKPNSHVVRT KATKCSKVVF  180
KNSLPQSSTM QMQNNSEAEA ETEPSTRVDA ANEFLSFSGE EKEVSEDLLV DFNMGNDNGL  240
SEFLNSDLSN MCNFSYNELL LSPCSDQPPM LSDEILKNWT QCCFNDETNV SNNFHSFNSF  300
LDSSEEVLGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1578204e-73JN157820.1 Medicago truncatula tannin-related R2R3 MYB transcription factor (Myb14) gene, Myb14-1 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507986.10.0transcription repressor MYB6
TrEMBLA0A1S2YPN70.0A0A1S2YPN7_CICAR; transcription repressor MYB6
STRINGXP_004507986.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-62MYB family protein