PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004507947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HSF | ||||||||
Protein Properties | Length: 415aa MW: 47134.2 Da PI: 5.1723 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.8 | 1.1e-35 | 103 | 194 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkk++e++ed+e++ ++sws+ +sf+v+d++ef+k +LpkyFkh+nf+SF+RQLn+YgF+kv++++ weF+++ F+ gkk+ll++ XP_004507947.1 103 FLKKTFEMVEDPETDPIVSWSAARDSFIVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSDR---------WEFANEGFQGGKKHLLKN 188 9********************999*****************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+++ XP_004507947.1 189 IRRRSK 194 ****87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.04E-34 | 99 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.6E-58 | 99 | 192 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 7.1E-38 | 99 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.0E-32 | 103 | 192 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-19 | 103 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-19 | 141 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 142 | 166 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.4E-19 | 154 | 166 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MAVVDGGYDG GYDGEIGGCR SCLIPPVKRE LLDDSAASIS SYAYDDVLSE RKDSVVTEEE 60 GATPTPAIHI KEEIFDDDGA NASSSMKFPK PMEGLHEVGP PPFLKKTFEM VEDPETDPIV 120 SWSAARDSFI VWDSHEFSKI LLPKYFKHNN FSSFIRQLNT YGFRKVDSDR WEFANEGFQG 180 GKKHLLKNIR RRSKYNKLHQ GGFNLMKPSV ESEVEKLKKD QNMLKVEILK LRQQQENSNI 240 QLTNVQERVR RAELKQYQMI FFLTKMAKRP LFMEQLIQKM KRKKEVDGTI DSVKRPRLLG 300 TQVTNVEQFA TLQSELNGLF SENLNTEKME PPVSTSMEDG LCSSLHEFRA YGSRQNVQDV 360 SSAYHVMSEK LLGENSVVDE EMDVNDSNIY LELEDLISKP TDWIGSASGL VGQTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-24 | 101 | 192 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 4e-24 | 101 | 192 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-24 | 101 | 192 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-24 | 101 | 192 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004507947.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-45 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507947.1 | 0.0 | heat shock factor protein HSF30 | ||||
TrEMBL | A0A1S2YPK6 | 0.0 | A0A1S2YPK6_CICAR; heat shock factor protein HSF30 | ||||
STRING | XP_004507947.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-78 | heat shock transcription factor A2 |