PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507931.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 266aa    MW: 29850.6 Da    PI: 9.7745
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507931.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-19130163134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+ttkTplWR+gp g+ktLCnaCG+++rk +
  XP_004507931.1 130 CSDCNTTKTPLWRSGPKGPKTLCNACGIRQRKAR 163
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-13124164No hitNo description
SMARTSM004011.2E-19124175IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-16128163IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.651128160IPR000679Zinc finger, GATA-type
CDDcd002021.76E-15129161No hitNo description
PROSITE patternPS003440130155IPR000679Zinc finger, GATA-type
PfamPF003206.7E-17130163IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIPSPPYHHS LSLDLNQDHH YHQFSTPHHH TSSFSSYPPN YIEEVEKMIP STAEKHDSRS  60
MKQKLTIRWK KEESDEMNNN IESVESADTK MIDSDDVPNK KQLEVSPVGR DNSSSSSNNN  120
YSTTPTVRVC SDCNTTKTPL WRSGPKGPKT LCNACGIRQR KARRAMAAAA AAAANGVMTV  180
DKTSSVKQNK LQKKENKSKI HHSSKVPHMK KKRKVETKPS QTTNNFSFED FTLMLSNNLA  240
VQQVFPQDEK EAAILLMALS YGLVHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214KKKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507931.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507931.10.0GATA transcription factor 21
TrEMBLA0A1S2YPK00.0A0A1S2YPK0_CICAR; GATA transcription factor 21
STRINGXP_004507931.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-33cytokinin-responsive gata factor 1